Glyma18g11551 - SoyBase

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Report for Sequence Feature Glyma18g11551

Feature Type:	gene_model
Chromosome:	Gm18
Start:	10294919
stop:	10315247
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g11551

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G54920	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr5:22302111-22305576 FORWARD LENGTH=517	SoyBase	E_val: 3.00E-79	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR12854	Panther	ATAXIN 2-RELATED	JGI		ISS
PTHR12854:SF10	Panther	OS04G0625900 PROTEIN	JGI		ISS
UniRef100_Q8RY61	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT4g26990/F10M23_330 n=1 Tax=Arabidopsis thaliana RepID=Q8RY61_ARATH	SoyBase	E_val: 1.00E-73	ISS
UniRef100_UPI000233F2BE	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F2BE related cluster n=1 Tax=unknown RepID=UPI000233F2BE	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g11551

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g11551 not represented in the dataset	Glyma18g11551 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g11551

Paralog	Evidence	Comments
Glyma08g42700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g11551 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g099000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g11551

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g11551

Limit To All Plant Sequences

>Glyma18g11551.1   sequence type=CDS   gene model=Glyma18g11551   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTGCAGAAACAGGGACTCAATCACAGAGAATCACACTTCGTCATCATCATCTTCTTCTGATTCACTCAGTGAAGCCTTGCTTTTCACCACCATGTGCATCGTTGGCCACCCCGTCGATGTTCACGTTAAGGATGGCTCTGTCTATTCTGGAATCTTCCACACTGCTTCTGTTCACGCCGACTACGGTATTGTTTTGAAGAAAGCAAGGATGACCAAGAAGGGAAAGGGCAACAATAATGTCGGAAATGAGGGCTTCGTGGATACATTAGTGATTCTATCCAGTGATCTTGTGCAAGTTGTAGCTAAGGGAGTAATGCTTCATGCAGATGTTGTTGGTGGAAACATAACTGGTGGCGATGAGGAAGCAGTTGCGCATAATGTTTGTTCCGAGAGTCTAACGTGTGAGGTAGAGAATCATACAGGGCCTTTGATGGACACAAAACAGGTTAATCACTCAAGACAAGCCGGAGACGACAAGTCAAACTCAAACGGGAAAACTGATAACTGCGGAGAGAAGTCTGAGTTTGTTAATGAAAAAACTGATGAAAAGATTCAAAGCCTCAATTCAAGCCATGAAACCGATACATCGCTAGGCCAAGAGGTAGCTGTTGAGCATGGAAGTACAGATAGGACATCAATTCCTTCTGATAATGGATTACTCTGCAACAACACCCCTGCATCTGTTAAGGCCAGTGATCGGAATAGTGAAAGGTCTACTTCTGCAGACTCTGTCTCTACAAATTTAACCCAAGGTGTGGATCTCATCCAAGATTCACAACCAGCAAGATCCAATGAAATATCTGTTCCAAGGGGTACAGGTTCTACTAGAAATGCTAAGGAATTTAAGCTCAATCCAGCTGCCAAAACCTTCTCTCCATCTTTTGTGAATCCCATGCCAGCAACTTCGGCTGCAAACATGGTATACATACCAAATAGCTCTCCTCCAGTACCTGTTACTATTCAACCTGAAGTTGGATTCAATACTTTTGCTTCTCGGCCATCAATGCCTGTTAAGGTTTCACAGTATAGTAATTTGACGGTGGGAAATGGTGGCAGTGGCTCTCAATTTTCGCAACCTATTGTTGGACATGTGGCGCATAGAGCCCAACCTCTACGATATGCTACACATTACAATCCTGTTTTGTCTGAACCTGCTTATATGCAACCAAGCTCTCCTGCTGTTATGGTTGGACGTTCCCCCCAGTTAGTCTATGTTCAGCCAGTTTCCCATGATTTGATTCATGGAACGACGGCTGTCCCACCAGTCTCAGCTCGCCCTCTGATGAATCATGTACAATTTCCAAAGCAGCAGGGAGGAACAATTGGTCCAGCAATGCCGGTTTGTGTGCCCCCTCCTGTCTTAACAAGTGGACATCAGCCCTTCACACTTCGAAGCCACATTCCTCTTCTGCAACCTGGCTTTCCTGTCTCTCGACCTATTTCCGTCCCAGGACCAAATGGTTTCTATGGCACCAAGTTTTAG

Predicted protein sequences of Glyma18g11551

Limit To All Plant Sequences

>Glyma18g11551.1   sequence type=predicted peptide   gene model=Glyma18g11551   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCRNRDSITENHTSSSSSSSDSLSEALLFTTMCIVGHPVDVHVKDGSVYSGIFHTASVHADYGIVLKKARMTKKGKGNNNVGNEGFVDTLVILSSDLVQVVAKGVMLHADVVGGNITGGDEEAVAHNVCSESLTCEVENHTGPLMDTKQVNHSRQAGDDKSNSNGKTDNCGEKSEFVNEKTDEKIQSLNSSHETDTSLGQEVAVEHGSTDRTSIPSDNGLLCNNTPASVKASDRNSERSTSADSVSTNLTQGVDLIQDSQPARSNEISVPRGTGSTRNAKEFKLNPAAKTFSPSFVNPMPATSAANMVYIPNSSPPVPVTIQPEVGFNTFASRPSMPVKVSQYSNLTVGNGGSGSQFSQPIVGHVAHRAQPLRYATHYNPVLSEPAYMQPSSPAVMVGRSPQLVYVQPVSHDLIHGTTAVPPVSARPLMNHVQFPKQQGGTIGPAMPVCVPPPVLTSGHQPFTLRSHIPLLQPGFPVSRPISVPGPNGFYGTKF*

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