Glyma18g11530 - SoyBase

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Report for Sequence Feature Glyma18g11530

Feature Type:	gene_model
Chromosome:	Gm18
Start:	10265262
stop:	10272937
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g11530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G54930	AT	Annotation by Michelle Graham. TAIR10: AT hook motif-containing protein \| chr5:22305897-22306839 REVERSE LENGTH=283	SoyBase	E_val: 6.00E-26	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
UniRef100_D7MUX9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT hook motif-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MUX9_ARALL	SoyBase	E_val: 1.00E-24	ISS
UniRef100_I1N0R0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N0R0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g11530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g11530

Paralog	Evidence	Comments
Glyma08g42710	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g11530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g098900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g11530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g11530

Limit To All Plant Sequences

>Glyma18g11530.2   sequence type=transcript   gene model=Glyma18g11530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTCACTGGACCCACTCAATTGGACACGTGTCATATCCTCACAGCACCGTTACGAGACATTTCATAACAGCTTGATGCGGTAGCACTCCGTGTGCGTGAGCGTGAGTTCGTGTGTGACATTGCACTCTCTTACACTGCGCCACCTCGTTCTCTCCGTCTAAATAGCTTTCACTTCCTCATTCTTCTTCTTCGTGCGTGCGTGTTTCTGTAAAATCGAATCTCAAGTCTCTGAATCTGAATCTCAACACAACCTTCGTTGTTCTCAACACTGTGTTCGTTTTTGCTGCCAAGGTTACAACACTGAAAGAGACACCGGAGTAACATAAATAAGATGGACCAACAAAACCAAAATAACACTCCAGATGGTTCAGGAGAGGTGCCTTTGAAGCGCAAACGTGGTCGTCCACGGAAATACCCAAAGCCAGATTCAGAGGAGAGTTCCTATATCCTAGTTAGTCAAAATAAAAGGCAGAATCCTGTTCGTGCGGAACAAGCTCCAGTACCTCCTGGATTTGAAGGGGTTAATGGAAATCAACAGCTTCAAAGGGGTCAAGATAATCATTCAAATAATGAATTGGTGGGCCAGGTAGTTTCTGGTGTAATCGAGGCTGTATTTGATGCTGGATATTTGCTCAGCGTTAGAGTTGGTGATTCTGATACTACTTTGAGGGGGCTAGTCTTCAAGCCTGGACGATACGTTCCTATTTCACCTGATAATGATGTTGCTCCAAGTGTTCCAATGATCCAAAGAAATGAAGTTTCCTTCCCCTCAAGAGCTGCTCAGGTTCAGACTCCTCTCCCAAAGGAAAGGAATGAACAGCCTGTGAATGTTCATAGAGTTGAAACTCTCGCAATGAATGGCTCACCATCTGTCCCTCAGGTACCTAGAGGAGCTGTCAGTTCTAGTAACTTAGTTGCCTCTACCGGAAAGAGTGTGCCTTCTGTGACGGGCCAGATCACTCATCAACTACCCAGAGGTAATGTGGTGCCTGTTCTGCTCCAGCCTAATAATTTTTCAAATGGAGTGCCAGTTTCTAATCAACCATCACAAGTCAAGACCCAAGTTTCTCTAGGGAGCGGAGTGATTGCTGCCAAAGAAATTCCTGTAGATGGAAGCCATGCACTCGTCTCTCTCACTCAAACCAGCCAGAATTTATTGCCAAGCAGTGTGCAAAGTGAAGGTGTTTCACCACATAATCAATCTTCATCCAATGTGTTGAATGAAGATCAAGCTAAATCTATGAGAATGCCTGGCATGCCTTTTGAGCAACTGGTTACTGAAGTTGTTAAGAGGATCCAAGCTCCGTCAGATGCAATGGATACCGAGACTGACAACAGTAAGTCAGGTGACAATACAGTAGTGAAGTATCCAAGCTGTAGGCAGGAAGACAAAGTTAATGAGATGGATCAACCCATCTTGATTAAGCCTCTTCAAGCTGTACAGTCTCTACCTCAGGAAAGCTCCACATCTGCTCCCAAACCTGCAGACTATACTGAAACTGGCAGAGTGAATGAGCTTTTGCAGGTTTTGCAGCATAACAAAACAGAGAACCAGGCATCCACCATAGCAGCAGAGCTAGGATCTGGAAACAAGTTGGATGATATAAGGAATTTAGGAACTGGACTTGAAGATGGTGGAACGTTCAATCAACAAAGCCTTTCTGAGCATTGAATGCCTGATTTATAAATTTTTATCATTAGAAGCTATTGTGCCAGCAGATTTATCTGTCATAAAGTAGGTATTTATCTGGCATGGTGAAATATTTAGTTTTTAGTTCTAGTCTCAAGGATCTTAAATAATTTAAACTTGCAAGCCTTATTGAGTTTTGTGGAGAAAAGGTAGCTTGTTATAGTTATATTTATGTTTTTACATTATAGACCATACCTTCAAGTCGGATGTTAATTACTTTCCTAGCAATCGATTATTATCCAAAACTTTAATTTAATGTTTCAATCCATTTTATCAGGCTGTTAATTGCATTGGGTGCTTTGTGGTGCTATTGTTACATTTGTTATTTAC

Coding sequences of Glyma18g11530

Limit To All Plant Sequences

>Glyma18g11530.1   sequence type=CDS   gene model=Glyma18g11530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCAACAAAACCAAAATAACACTCCAGATGGTTCAGGAGAGGTGCCTTTGAAGCGCAAACGTGGTCGTCCACGGAAATACCCAAAGCCAGATTCAGAGGAGAGTTCCTATATCCTAGTTAGTCAAAATAAAAGGCAGAATCCTGTTCGTGCGGAACAAGCTCCAGTACCTCCTGGATTTGAAGGGGTTAATGGAAATCAACAGCTTCAAAGGGGTCAAGATAATCATTCAAATAATGAATTGGTGGGCCAGGTAGTTTCTGGTGTAATCGAGGCTGTATTTGATGCTGGATATTTGCTCAGCGTTAGAGTTGGTGATTCTGATACTACTTTGAGGGGGCTAGTCTTCAAGCCTGGACGATACGTTCCTATTTCACCTGATAATGATGTTGCTCCAAGTGTTCCAATGATCCAAAGAAATGAAGTTTCCTTCCCCTCAAGAGCTGCTCAGGTTCAGACTCCTCTCCCAAAGGAAAGGAATGAACAGCCTGTGAATGTTCATAGAGTTGAAACTCTCGCAATGAATGGCTCACCATCTGTCCCTCAGGTACCTAGAGGAGCTGTCAGTTCTAGTAACTTAGTTGCCTCTACCGGAAAGAGTGTGCCTTCTGTGACGGGCCAGATCACTCATCAACTACCCAGAGGTAATGTGGTGCCTGTTCTGCTCCAGCCTAATAATTTTTCAAATGGAGTGCCAGTTTCTAATCAACCATCACAAGTCAAGACCCAAGTTTCTCTAGGGAGCGGAGTGATTGCTGCCAAAGAAATTCCTGTAGATGGAAGCCATGCACTCGTCTCTCTCACTCAAACCAGCCAGAATTTATTGCCAAGCAGTGTGCAAAGTGAAGGTGTTTCACCACATAATCAATCTTCATCCAATGTGTTGAATGAAGATCAAGCTAAATCTATGAGAATGCCTGGCATGCCTTTTGAGCAACTGGTTACTGAAGTTGTTAAGAGGATCCAAGCTCCGTCAGATGCAATGGATACCGAGACTGACAACAGTAAGTCAGGTGACAATACAGTAGTGAAGTATCCAAGCTGTAGGCAGGAAGACAAAGTTAATGAGATGGATCAACCCATCTTGATTAAGCCTCTTCAAGCTGTACAGTCTCTACCTCAGGAAAGCTCCACATCTGCTCCCAAACCTGCAGACTATACTGAAACTGGCAGAGTGAATGAGCTTTTGCAGCATAACAAAACAGAGAACCAGGCATCCACCATAGCAGCAGAGCTAGGATCTGGAAACAAGTTGGATGATATAAGGAATTTAGGAACTGGACTTGAAGATGGTGGAACGTTCAATCAACAAAGCCTTTCTGAGCATTGA

>Glyma18g11530.2   sequence type=CDS   gene model=Glyma18g11530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCAACAAAACCAAAATAACACTCCAGATGGTTCAGGAGAGGTGCCTTTGAAGCGCAAACGTGGTCGTCCACGGAAATACCCAAAGCCAGATTCAGAGGAGAGTTCCTATATCCTAGTTAGTCAAAATAAAAGGCAGAATCCTGTTCGTGCGGAACAAGCTCCAGTACCTCCTGGATTTGAAGGGGTTAATGGAAATCAACAGCTTCAAAGGGGTCAAGATAATCATTCAAATAATGAATTGGTGGGCCAGGTAGTTTCTGGTGTAATCGAGGCTGTATTTGATGCTGGATATTTGCTCAGCGTTAGAGTTGGTGATTCTGATACTACTTTGAGGGGGCTAGTCTTCAAGCCTGGACGATACGTTCCTATTTCACCTGATAATGATGTTGCTCCAAGTGTTCCAATGATCCAAAGAAATGAAGTTTCCTTCCCCTCAAGAGCTGCTCAGGTTCAGACTCCTCTCCCAAAGGAAAGGAATGAACAGCCTGTGAATGTTCATAGAGTTGAAACTCTCGCAATGAATGGCTCACCATCTGTCCCTCAGGTACCTAGAGGAGCTGTCAGTTCTAGTAACTTAGTTGCCTCTACCGGAAAGAGTGTGCCTTCTGTGACGGGCCAGATCACTCATCAACTACCCAGAGGTAATGTGGTGCCTGTTCTGCTCCAGCCTAATAATTTTTCAAATGGAGTGCCAGTTTCTAATCAACCATCACAAGTCAAGACCCAAGTTTCTCTAGGGAGCGGAGTGATTGCTGCCAAAGAAATTCCTGTAGATGGAAGCCATGCACTCGTCTCTCTCACTCAAACCAGCCAGAATTTATTGCCAAGCAGTGTGCAAAGTGAAGGTGTTTCACCACATAATCAATCTTCATCCAATGTGTTGAATGAAGATCAAGCTAAATCTATGAGAATGCCTGGCATGCCTTTTGAGCAACTGGTTACTGAAGTTGTTAAGAGGATCCAAGCTCCGTCAGATGCAATGGATACCGAGACTGACAACAGTAAGTCAGGTGACAATACAGTAGTGAAGTATCCAAGCTGTAGGCAGGAAGACAAAGTTAATGAGATGGATCAACCCATCTTGATTAAGCCTCTTCAAGCTGTACAGTCTCTACCTCAGGAAAGCTCCACATCTGCTCCCAAACCTGCAGACTATACTGAAACTGGCAGAGTGAATGAGCTTTTGCAGGTTTTGCAGCATAACAAAACAGAGAACCAGGCATCCACCATAGCAGCAGAGCTAGGATCTGGAAACAAGTTGGATGATATAAGGAATTTAGGAACTGGACTTGAAGATGGTGGAACGTTCAATCAACAAAGCCTTTCTGAGCATTGA

Predicted protein sequences of Glyma18g11530

Limit To All Plant Sequences

>Glyma18g11530.1   sequence type=predicted peptide   gene model=Glyma18g11530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDQQNQNNTPDGSGEVPLKRKRGRPRKYPKPDSEESSYILVSQNKRQNPVRAEQAPVPPGFEGVNGNQQLQRGQDNHSNNELVGQVVSGVIEAVFDAGYLLSVRVGDSDTTLRGLVFKPGRYVPISPDNDVAPSVPMIQRNEVSFPSRAAQVQTPLPKERNEQPVNVHRVETLAMNGSPSVPQVPRGAVSSSNLVASTGKSVPSVTGQITHQLPRGNVVPVLLQPNNFSNGVPVSNQPSQVKTQVSLGSGVIAAKEIPVDGSHALVSLTQTSQNLLPSSVQSEGVSPHNQSSSNVLNEDQAKSMRMPGMPFEQLVTEVVKRIQAPSDAMDTETDNSKSGDNTVVKYPSCRQEDKVNEMDQPILIKPLQAVQSLPQESSTSAPKPADYTETGRVNELLQHNKTENQASTIAAELGSGNKLDDIRNLGTGLEDGGTFNQQSLSEH*

>Glyma18g11530.2   sequence type=predicted peptide   gene model=Glyma18g11530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDQQNQNNTPDGSGEVPLKRKRGRPRKYPKPDSEESSYILVSQNKRQNPVRAEQAPVPPGFEGVNGNQQLQRGQDNHSNNELVGQVVSGVIEAVFDAGYLLSVRVGDSDTTLRGLVFKPGRYVPISPDNDVAPSVPMIQRNEVSFPSRAAQVQTPLPKERNEQPVNVHRVETLAMNGSPSVPQVPRGAVSSSNLVASTGKSVPSVTGQITHQLPRGNVVPVLLQPNNFSNGVPVSNQPSQVKTQVSLGSGVIAAKEIPVDGSHALVSLTQTSQNLLPSSVQSEGVSPHNQSSSNVLNEDQAKSMRMPGMPFEQLVTEVVKRIQAPSDAMDTETDNSKSGDNTVVKYPSCRQEDKVNEMDQPILIKPLQAVQSLPQESSTSAPKPADYTETGRVNELLQVLQHNKTENQASTIAAELGSGNKLDDIRNLGTGLEDGGTFNQQSLSEH*

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