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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G07470 | AT | Annotation by Michelle Graham. TAIR10: peptidemethionine sulfoxide reductase 3 | chr5:2362760-2364286 REVERSE LENGTH=202 | SoyBase | E_val: 5.00E-111 | ISS |
| GO:0000902 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell morphogenesis | SoyBase | N/A | ISS |
| GO:0006464 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular protein modification process | SoyBase | N/A | ISS |
| GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
| GO:0009416 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to light stimulus | SoyBase | N/A | ISS |
| GO:0016049 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell growth | SoyBase | N/A | ISS |
| GO:0019538 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein metabolic process | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0008113 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: peptide-methionine (S)-S-oxide reductase activity | SoyBase | N/A | ISS |
| GO:0016671 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | SoyBase | N/A | ISS |
| KOG1635 | KOG | Peptide methionine sulfoxide reductase | JGI | ISS | |
| PTHR10173 | Panther | METHIONINE SULFOXIDE REDUCTASE | JGI | ISS | |
| PTHR10173:SF6 | Panther | METHIONINE SULFOXIDE REDUCTASE | JGI | ISS | |
| PF01625 | PFAM | Peptide methionine sulfoxide reductase | JGI | ISS | |
| UniRef100_C6TE15 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TE15_SOYBN | SoyBase | E_val: 5.00E-151 | ISS |
| UniRef100_G7IXM5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Peptide methionine sulfoxide reductase n=2 Tax=Medicago truncatula RepID=G7IXM5_MEDTR | SoyBase | E_val: 1.00E-121 | ISS |
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Glyma18g11110 not represented in the dataset |
Glyma18g11110 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g42790 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g097000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g11110.2 sequence type=transcript gene model=Glyma18g11110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCTGTGTTATCCCTATCTTGTATATCATGTATTGTTGCACTTATCAATTTCATCGTATGGTTCAATGGTAGACTGGATTAAAACTACACTCTTATTTTTAAACTTTTGGTTATGTGTTTAAGTTGTCAATCTGTTTTCCTGGCATCTTAAGTTGGTATTCCTCCCCTCCCCCCCTTTTATCAAGGATACTTTTTAATTAATTTATTACTACTAGAAAAGTGTGCTTATTTTACTCAAACTCCTTGCAGCAATAAGCATCAGCACTCTGCCACATCCAGTTCCCTTCTGCGTGTTCCTTTCTTCTACTCTCTCCAGTCCGGCCAAAGCGAAGCTCCTTCCATCATTTTCAGTTTTTACTGTCAAGTGCTGTTGCTTCTGCTCCCAAACTTATCCAAATATTGCTTGTAACAAGTCGCCCATGAACTTGTTGAGCAGAATCGTTGGGTTGGGTAGCCCAAGGGCTGCACAAAACATGAATTCAACCACTGCTCAGGGACCAGATGATGAGATACCAGCACCAGGTCAACAGTTTGCCCAGTTTGGTGCTGGCTGCTTTTGGAGTGTTGAGCTGGCCTTCCAGAGGGCAGCAGGGGTGACCAAGACAGAAGTTGGTTATAGCCAGGGGCAGTTGCCTAATCCAAGCTATGAGGATGTGTGTATGGGAACCACACACCACTCGGAGGTTGTCCGGGTCGAATATGATCCCAATGAATGTAGCTATGAGAGTTTGCTTGATGTGTTCTGGGCTAGACATGATCCTACCACACTGAATCGGCAGGGTAATGATGTAGGAACACAATACAGGTCTGGAATATACTATTACACACCTGAACAGGAGAAGGCAGCCATAGAGTCTCTGGAACAACAACAGAAGAAGCTGAACAGGAAGATTGTTACTGAGATCCTTCCTGCCAAGAAGTTCTACAGGGCAGAAGAATACCATCAACAGTACCTTGAGAAAGGAGGGAGATTTGGTTCCAAGCAATCTGCTTCTAAGGGATGCAATGATCCAATTCGATGCTATGGTTAGATTAATATGTCTAGATGTTGAAAGCAGGGAGTTTTCTTGATAAGTATTTGTTAATATATCAATAAAGTAATTCAAAACCTGCCTACTCTCTGTATTGTATTTATAGGGTGAAGATCACTATAGAATTAGAATCAGTTTTAATGTTATGTAGTATTTTATATGTATAGTTCTCTAATAAGCTGATTTTATAATAACTTTGATTAGTGGCACTTCTTGAGTTAAAATATCGTTATTTTGTTGGGTTTTTC
>Glyma18g11110.1 sequence type=CDS gene model=Glyma18g11110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACTTGTTGAGCAGAATCGTTGGGTTGGGTAGCCCAAGGGCTGCACAAAACATGAATTCAACCACTGCTCAGGGACCAGATGATGAGATACCAGCACCAGGTCAACAGTTTGCCCAGTTTGGTGCTGGCTGCTTTTGGAGTGTTGAGCTGGCCTTCCAGAGGGCAGCAGGGGTGACCAAGACAGAAGTTGGTTATAGCCAGGGGCAGTTGCCTAATCCAAGCTATGAGGATGTGTGTATGGGAACCACACACCACTCGGAGGTTGTCCGGGTCGAATATGATCCCAATGAATGTAGCTATGAGAGTTTGCTTGATGTGTTCTGGGCTAGACATGATCCTACCACACTGAATCGGCAGGGTAATGATGTAGGAACACAATACAGGTCTGGAATATACTATTACACACCTGAACAGGAGAAGGCAGCCATAGAGTCTCTGGAACAACAACAGAAGAAGCTGAACAGGAAGATTGTTACTGAGATCCTTCCTGCCAAGAAGTTCTACAGGGCAGAAGAATACCATCAACAGTACCTTGAGAAAGGAGGGAGATTTGGTTCCAAGCAATCTGCTTCTAAGGGATGCAATGATCCAATTCGATGCTATGGTTAG >Glyma18g11110.2 sequence type=CDS gene model=Glyma18g11110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACTTGTTGAGCAGAATCGTTGGGTTGGGTAGCCCAAGGGCTGCACAAAACATGAATTCAACCACTGCTCAGGGACCAGATGATGAGATACCAGCACCAGGTCAACAGTTTGCCCAGTTTGGTGCTGGCTGCTTTTGGAGTGTTGAGCTGGCCTTCCAGAGGGCAGCAGGGGTGACCAAGACAGAAGTTGGTTATAGCCAGGGGCAGTTGCCTAATCCAAGCTATGAGGATGTGTGTATGGGAACCACACACCACTCGGAGGTTGTCCGGGTCGAATATGATCCCAATGAATGTAGCTATGAGAGTTTGCTTGATGTGTTCTGGGCTAGACATGATCCTACCACACTGAATCGGCAGGGTAATGATGTAGGAACACAATACAGGTCTGGAATATACTATTACACACCTGAACAGGAGAAGGCAGCCATAGAGTCTCTGGAACAACAACAGAAGAAGCTGAACAGGAAGATTGTTACTGAGATCCTTCCTGCCAAGAAGTTCTACAGGGCAGAAGAATACCATCAACAGTACCTTGAGAAAGGAGGGAGATTTGGTTCCAAGCAATCTGCTTCTAAGGGATGCAATGATCCAATTCGATGCTATGGTTAG
>Glyma18g11110.1 sequence type=predicted peptide gene model=Glyma18g11110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNLLSRIVGLGSPRAAQNMNSTTAQGPDDEIPAPGQQFAQFGAGCFWSVELAFQRAAGVTKTEVGYSQGQLPNPSYEDVCMGTTHHSEVVRVEYDPNECSYESLLDVFWARHDPTTLNRQGNDVGTQYRSGIYYYTPEQEKAAIESLEQQQKKLNRKIVTEILPAKKFYRAEEYHQQYLEKGGRFGSKQSASKGCNDPIRCYG* >Glyma18g11110.2 sequence type=predicted peptide gene model=Glyma18g11110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNLLSRIVGLGSPRAAQNMNSTTAQGPDDEIPAPGQQFAQFGAGCFWSVELAFQRAAGVTKTEVGYSQGQLPNPSYEDVCMGTTHHSEVVRVEYDPNECSYESLLDVFWARHDPTTLNRQGNDVGTQYRSGIYYYTPEQEKAAIESLEQQQKKLNRKIVTEILPAKKFYRAEEYHQQYLEKGGRFGSKQSASKGCNDPIRCYG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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