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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G26965 | AT | Annotation by Michelle Graham. TAIR10: NADH:ubiquinone oxidoreductase, 17.2kDa subunit | chr4:13539717-13542041 FORWARD LENGTH=184 | SoyBase | E_val: 2.00E-69 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0008137 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NADH dehydrogenase (ubiquinone) activity | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| PTHR12910 | Panther | NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT B17.2 | JGI | ISS | |
| PF05071 | PFAM | NADH ubiquinone oxidoreductase subunit NDUFA12 | JGI | ISS | |
| UniRef100_D7MEK6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: NADH:ubiquinone oxidoreductase family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MEK6_ARALL | SoyBase | E_val: 4.00E-69 | ISS |
| UniRef100_UPI000233E294 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E294 related cluster n=1 Tax=unknown RepID=UPI000233E294 | SoyBase | E_val: 1.00E-126 | ISS |
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Glyma18g10960 not represented in the dataset |
Glyma18g10960 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g42890 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g095900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g10960.2 sequence type=transcript gene model=Glyma18g10960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTTTTGTCTGTTTCATTTTCATGGGGTTCGGGAAGCAAAACTAGAAGTGCAGGAATCAACACCCCAAGCGAGCAAAGCAATACCAAACTCATTAACTCAACATTTTCCGTCGCTCCCACACTCCCTCTTTAGAATAAACGTTGAATAGAACAAAATCATGTTCTAAGTTTCTTTAGTTCCAATCTCCAACTTTGGATTGTTTGTTCCAACGACGATGCTGTCCCTTTAACACATTTGAATTCTACGCAATTTTTTTTAAAAAAATGCGAAGGCTGCTCGGGAAGATTTCTGGGTTCTTGAGCAATCGAACTATGGTGGGAGTGGACAAAACAGGGAACAAATACTTCACCAGAAATGAAGAGGTTGATGGTATCGTGAAAGAGAAAAGATGGGTGATATTTAAAGGAGAGGAGGATCCTACCTCTATCCCAGTTGAATGGATATGTTGGCTGAATGGGCAGCGTAAAAAGGCTCCAACTCCAGAGGAAATGATGGAATTGGAAGCAAGACGTGAACGTGTTAGACAGAATGTTGCTCTTCTCAAGAAAGAAGAAGAAGAAAGAATAACCAAAGAAGGAAGCAAAGGCAAACGTGTCAGCACTGGAAAAGTCAGTGGTCCAGACTTGAAAAGTTTTATTCAGCAACTCCCAGTTTCTTCAGAAGGTAAAGAGGTTGAAGAACCACCTAGCGCAATGGGTGGCTTAAGGAATCCTCAGGAGAGCTTAGCTGAGAAAGAAAAAGATGAGTCTGAGTCTTCAGAGCCAACTGGATCTGGTGCATCTTTTAGACCAGGAACTTGGCAACCTCCAACTTGATCTTTCATTACAACCAAGGGCCTTGCCGAGCTTGTATTAGCCATGCGCTGTTTCGAAAATCCATCTGAGATATATTTCTCCCTCAAGAATTTTGATATAATTCATGTGTTATCAAGTTTCTAGAAATTTTAATTCATTGATAAACCTTTGCTTAAAGAATATGGCCAATAAGACATCCTGCTTTATGCATTTGCAATGCGTCTGCTTGTTGTACTGAGTAACTTAGTTCTTCCCAAATAATCTCTGGGTTTGGATGCATTATGAATCTATTGTGTGGCATGCCCTCAAATATCAGTTTTGTTAACCTTTCAGCTCATTAAGATAAAGGTGTTTTGTTATTATATTTATTAGATCAAATTA
>Glyma18g10960.1 sequence type=CDS gene model=Glyma18g10960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGAAGGCTGCTCGGGAAGATTTCTGGGTTCTTGAGCAATCGAACTATGGTGGGAGTGGACAAAACAGGGAACAAATACTTCACCAGAAATGAAGAGGTTGATGGTATCGTGAAAGAGAAAAGATGGGTGATATTTAAAGGAGAGGAGGATCCTACCTCTATCCCAGTTGAATGGATATGTTGGCTGAATGGGCAGCGTAAAAAGGCTCCAACTCCAGAGGAAATGATGGAATTGGAAGCAAGACGTGAACGTGTTAGACAGAATGTTGCTCTTCTCAAGAAAGAAGAAGAAGAAAGAATAACCAAAGAAGGAAGCAAAGGCAAACGTGTCAGCACTGGAAAAGTCAGTGGTCCAGACTTGAAAAGTTTTATTCAGCAACTCCCAGTTTCTTCAGAAGAGGTTGAAGAACCACCTAGCGCAATGGGTGGCTTAAGGAATCCTCAGGAGAGCTTAGCTGAGAAAGAAAAAGATGAGTCTGAGTCTTCAGAGCCAACTGGATCTGGTGCATCTTTTAGACCAGGAACTTGGCAACCTCCAACTTGA >Glyma18g10960.2 sequence type=CDS gene model=Glyma18g10960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGAAGGCTGCTCGGGAAGATTTCTGGGTTCTTGAGCAATCGAACTATGGTGGGAGTGGACAAAACAGGGAACAAATACTTCACCAGAAATGAAGAGGTTGATGGTATCGTGAAAGAGAAAAGATGGGTGATATTTAAAGGAGAGGAGGATCCTACCTCTATCCCAGTTGAATGGATATGTTGGCTGAATGGGCAGCGTAAAAAGGCTCCAACTCCAGAGGAAATGATGGAATTGGAAGCAAGACGTGAACGTGTTAGACAGAATGTTGCTCTTCTCAAGAAAGAAGAAGAAGAAAGAATAACCAAAGAAGGAAGCAAAGGCAAACGTGTCAGCACTGGAAAAGTCAGTGGTCCAGACTTGAAAAGTTTTATTCAGCAACTCCCAGTTTCTTCAGAAGGTAAAGAGGTTGAAGAACCACCTAGCGCAATGGGTGGCTTAAGGAATCCTCAGGAGAGCTTAGCTGAGAAAGAAAAAGATGAGTCTGAGTCTTCAGAGCCAACTGGATCTGGTGCATCTTTTAGACCAGGAACTTGGCAACCTCCAACTTGA
>Glyma18g10960.1 sequence type=predicted peptide gene model=Glyma18g10960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRRLLGKISGFLSNRTMVGVDKTGNKYFTRNEEVDGIVKEKRWVIFKGEEDPTSIPVEWICWLNGQRKKAPTPEEMMELEARRERVRQNVALLKKEEEERITKEGSKGKRVSTGKVSGPDLKSFIQQLPVSSEEVEEPPSAMGGLRNPQESLAEKEKDESESSEPTGSGASFRPGTWQPPT* >Glyma18g10960.2 sequence type=predicted peptide gene model=Glyma18g10960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRRLLGKISGFLSNRTMVGVDKTGNKYFTRNEEVDGIVKEKRWVIFKGEEDPTSIPVEWICWLNGQRKKAPTPEEMMELEARRERVRQNVALLKKEEEERITKEGSKGKRVSTGKVSGPDLKSFIQQLPVSSEGKEVEEPPSAMGGLRNPQESLAEKEKDESESSEPTGSGASFRPGTWQPPT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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