Glyma18g10921 - SoyBase

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Report for Sequence Feature Glyma18g10921

Feature Type:	gene_model
Chromosome:	Gm18
Start:	9777715
stop:	9782271
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g10921

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G26930	AT	Annotation by Michelle Graham. TAIR10: myb domain protein 97 \| chr4:13527770-13529172 FORWARD LENGTH=389	SoyBase	E_val: 4.00E-66	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
KOG0048	KOG	Transcription factor, Myb superfamily	JGI		ISS
PTHR10641	Panther	MYB-RELATED	JGI		ISS
PTHR10641:SF30	Panther	MYB-RELATED TRANSCRIPTION FACTOR	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_G7IY34	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor n=1 Tax=Medicago truncatula RepID=G7IY34_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N0N4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N0N4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g10921

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g10921 not represented in the dataset	Glyma18g10921 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g10921

Paralog	Evidence	Comments
Glyma08g42955	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g10921 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g095600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g10921

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g10921

Limit To All Plant Sequences

>Glyma18g10921.2   sequence type=transcript   gene model=Glyma18g10921   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAATGCTTGTCCCTTCTGTTCAATTTTCCACATTGTCCTTTTTTAGCAGCAAATATCTGAGTTGTTATGAGCTTAGATAACAGGTAGGACTTAGGAGGAACCATTGGCTCCGAGAGTTATTAGCTAGCAACCGCAAACTTAGCAACCCCCTCTAAATTGGTCCCTTCATAAACCACCGTGATAACAAATCACCCTCATTCAGTTTATGCCTCTTGATTCTGTTGCCACCTTCCAAACAACCCTCCACCACTCTTCACCGCCTTAGTTCCGATCGCCCTACCGCCACAGCCACCGCCACCATAAATTACTTCCTGGTTACTACACATAGTAACAACTTTTTTTTATATGGTATAATTTATTTGGAACTCAGGAATTAACCTGTGCATCAAGGAGTTTGATACACACACCCCATCTTATTATATACTTTATTTCATAACGTGTATGCAGAGTATTATCTACCACGTGGGCATAAAAATTAAGCAATTGGCCTATGGAGAGAAAATTGATGAAATTAAACACATAGCAAGAAGTTGAAGTAATTTCTTTAATTGCCATCAAGTTTTGGAAGGAGTTGGAGCTTGATGGAGGGTATGGCAAACATTTGTGATGATGCAACCGATGGCGACAATGCGTTCCTAACCATGTTTGGTGGCGATGAAAGTGGTGGCAGTGGCGGTAGCGGTGGCAGAAGCGGTGGTGATCAGGGTGGTGGCAATGTGGAGGATGTGGCTCTGAAGAAGGGTCCTTGGACAACTGCAGAGGATGCTATTCTAACGGATTATGTGACAAAACATGGTGAAGGGAATTGGAATGCAGTGCAGAGGAACACGGGGTTGAATAGATGTGGCAAGAGTTGTAGGCTCAGATGGGCTAACCATTTGAGGCCCAATTTGAAAAAGGGTGCATTCTCACCTGAGGAAGAAAAGATCATTGTTGATCTTCATTCACAGTTTGGCAACAAATGGGCCAGAATGGCTGCTTTGTTACCTGGGAGAACAGACAATGAAATAAAGAACTATTGGAACACAAGGATTAAACGCCGCCAAAGGCAGGGTCTCCCTCTCTATTCAGATGAGCATGATCATAACCATCGTTCCACAACACCAACCTCTCCCACCACACCTTCCCCATGCCTCACACCAACAGGATCAAACCCCAACATTGCCACAAGTTTTGAGTTCTTCAATCAAAACCAACAACAACAACAACAATACCAACACCAATACCAATACCAACAACAACAACACCCTCTATCTCCAACTGCATCTCATCATTCCCCTCTCAGTTCCCCTCTTCAACACAGACAACCCTTCACCTCTTCATCACCTCACAATTTCTTAGACCATTCACCTCTTCCACTCTCCTCCTCTTCACCCTCCCCTCTCTCCTTCTCCTTCCAAAAACCAGCACCAATGCTAAGCACCCCTCTTCGCTTCAAGCGCTACCGCACCTCTCCAAGCTACAACAACCACCTCTCTGACCCTCCTCTCACCACCCAATTCCCTCACCTTGATGGATTCAGGTTCCCAGTTTCTTCAGGCTTTTCTCAGTTTTTTCAGCCCTCTTTATTAGACTCCGATCGAGGCGTTTCTTCTTCCTCCTCTTTGGCTTTCCAACCCAAGTTGGAGCTCCCTTCAAGCCAGTATTATAAACCACCCCATGAGCAAGACATTAAGCTTGACATTGAGTTCAATGATCCTTCTTTTCAAAGTAGTAGTAGTGGCTTTCTGGGGGATCTTCTCTTCGAGGCTCAGGCAATGGCTTCAGGCCAGAACTCAAAGAAACGAGGTTACTTGAGTTTGAATGAGAGAAATGATGTGTTTGATGCATGCCAAAGCTTTGAGAACTTTCCATCTAGCTCTCTTTACTGGCCTTCTTCAACTTCTGAACCAAAACCAAAGGAAGAGGCACCGGACTTCAGTAAATTCATGAATGAGGAGGTGTCATCATTGCTTACAGTGGTTCCATCTTCCAGTATGCATGGTCATGAGTGGCACAATAACAGTGCCACAGAAGTGTCCAATGTCCAATCGTCTGGTAGTGGCAAGACAGATGACAATTTTGTACTTGATATCAAACCCATAACTTCATTGTTTCCTCTCTCCAACACCGCAAGCCATGATGAAAACCAAGGATGCTACTCTTGGGACAATTTACCTGGTCTCTTCTAAGCCAATATTAAAAGTGAAGAATTTACGATGCTCAATCAGTTTTAATAAAGCTCGAGCTAATTAAGGAAAGAAGAATTAATTAAAGAAACAAGCTTACTGAGGAAAGCAGACTAATTAAGGAAAGAAGACTAATTGAGGAATGCTAGACTAATTAAGAAAAGAATAATAATTAAGGAAAGCATGACTAATTAAAAAAAGTAAAGGCAGACTTACTGCAAAAGAAGAAGAAAGAAGAAGGAAAAGAAACAGAAATTTCAGGAGAATACAATTTCCTATAAAAGACAACGGCTCGAAATAGGAGAAGCAAACATCGGGAGTCATTTCTTCCTTCCATTCCCTTTCTTATTTTTTCCCCCTTTACTAAATATTTTCCTCTTGCAATTGTAAAACCTCTATGACAATGAGAGGCTAAACCCTCTTTGTTGAGAATTCTTATCTATTTATGAATGTTACATTAGCAATATCTTTACCTGTGCTTAATATTATTACTTGTGGCTTGATCACCCATTTGCACGGTAAGTTTTAGGAGTAGCGTTGAGAAACGTTATTTTCTACTAGAAGTGGGAAAGGATATCTAAATAAAGTCATCTCTAGG

Coding sequences of Glyma18g10921

Limit To All Plant Sequences

>Glyma18g10921.1   sequence type=CDS   gene model=Glyma18g10921   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGGTATGGCAAACATTTGTGATGATGCAACCGATGGCGACAATGCGTTCCTAACCATGTTTGGTGGCGATGAAAGTGGTGGCAGTGGCGGTAGCGGTGGCAGAAGCGGTGGTGATCAGGGTGGTGGCAATGTGGAGGATGTGGCTCTGAAGAAGGGTCCTTGGACAACTGCAGAGGATGCTATTCTAACGGATTATGTGACAAAACATGGTGAAGGGAATTGGAATGCAGTGCAGAGGAACACGGGGTTGAATAGATGTGGCAAGAGTTGTAGGCTCAGATGGGCTAACCATTTGAGGCCCAATTTGAAAAAGGGTGCATTCTCACCTGAGGAAGAAAAGATCATTGTTGATCTTCATTCACAGTTTGGCAACAAATGGGCCAGAATGGCTGCTTTGTTACCTGGGAGAACAGACAATGAAATAAAGAACTATTGGAACACAAGGATTAAACGCCGCCAAAGGCAGGGTCTCCCTCTCTATTCAGATGAGCATGATCATAACCATCGTTCCACAACACCAACCTCTCCCACCACACCTTCCCCATGCCTCACACCAACAGGATCAAACCCCAACATTGCCACAAGTTTTGAGTTCTTCAATCAAAACCAACAACAACAACAACAATACCAACACCAATACCAATACCAACAACAACAACACCCTCTATCTCCAACTGCATCTCATCATTCCCCTCTCAGTTCCCCTCTTCAACACAGACAACCCTTCACCTCTTCATCACCTCACAATTTCTTAGACCATTCACCTCTTCCACTCTCCTCCTCTTCACCCTCCCCTCTCTCCTTCTCCTTCCAAAAACCAGCACCAATGCTAAGCACCCCTCTTCGCTTCAAGCGCTACCGCACCTCTCCAAGCTACAACAACCACCTCTCTGACCCTCCTCTCACCACCCAATTCCCTCACCTTGATGGATTCAGGTTCCCAGTTTCTTCAGGCTTTTCTCAGTTTTTTCAGCCCTCTTTATTAGACTCCGATCGAGGCGTTTCTTCTTCCTCCTCTTTGGCTTTCCAACCCAAGTTGGAGCTCCCTTCAAGCCAGTATTATAAACCACCCCATGAGCAAGACATTAAGCTTGACATTGAGTTCAATGATCCTTCTTTTCAAAGTAGTAGTAGTGGCTTTCTGGGGGATCTTCTCTTCGAGGCTCAGGCAATGGCTTCAGGCCAGAACTCAAAGAAACGAGGTTACTTGAGTTTGAATGAGAGAAATGATGTGTTTGATGCATGCCAAAGCTTTGAGAACTTTCCATCTAGCTCTCTTTACTGGCCTTCTTCAACTTCTGAACCAAAACCAAAGGAAGAGGCACCGGACTTCAGTAAATTCATGAATGAGGAGGTGTCATCATTGCTTACAGTGGTTCCATCTTCCAGTATGCATGGTCATGAGTGGCACAATAACAGTGCCACAGAAGTGTCCAATGTCCAATCGTCTGGTAGTGGCAAGACAGATGACAATTTTGTACTTGATATCAAACCCATAACTTCATTGTTTCCTCTCTCCAACACCGCAAGCCATGATGAAAACCAAGGATGCTACTCTTGGGACAATTTACCTGGTCTCTTCTAA

>Glyma18g10921.2   sequence type=CDS   gene model=Glyma18g10921   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGGTATGGCAAACATTTGTGATGATGCAACCGATGGCGACAATGCGTTCCTAACCATGTTTGGTGGCGATGAAAGTGGTGGCAGTGGCGGTAGCGGTGGCAGAAGCGGTGGTGATCAGGGTGGTGGCAATGTGGAGGATGTGGCTCTGAAGAAGGGTCCTTGGACAACTGCAGAGGATGCTATTCTAACGGATTATGTGACAAAACATGGTGAAGGGAATTGGAATGCAGTGCAGAGGAACACGGGGTTGAATAGATGTGGCAAGAGTTGTAGGCTCAGATGGGCTAACCATTTGAGGCCCAATTTGAAAAAGGGTGCATTCTCACCTGAGGAAGAAAAGATCATTGTTGATCTTCATTCACAGTTTGGCAACAAATGGGCCAGAATGGCTGCTTTGTTACCTGGGAGAACAGACAATGAAATAAAGAACTATTGGAACACAAGGATTAAACGCCGCCAAAGGCAGGGTCTCCCTCTCTATTCAGATGAGCATGATCATAACCATCGTTCCACAACACCAACCTCTCCCACCACACCTTCCCCATGCCTCACACCAACAGGATCAAACCCCAACATTGCCACAAGTTTTGAGTTCTTCAATCAAAACCAACAACAACAACAACAATACCAACACCAATACCAATACCAACAACAACAACACCCTCTATCTCCAACTGCATCTCATCATTCCCCTCTCAGTTCCCCTCTTCAACACAGACAACCCTTCACCTCTTCATCACCTCACAATTTCTTAGACCATTCACCTCTTCCACTCTCCTCCTCTTCACCCTCCCCTCTCTCCTTCTCCTTCCAAAAACCAGCACCAATGCTAAGCACCCCTCTTCGCTTCAAGCGCTACCGCACCTCTCCAAGCTACAACAACCACCTCTCTGACCCTCCTCTCACCACCCAATTCCCTCACCTTGATGGATTCAGGTTCCCAGTTTCTTCAGGCTTTTCTCAGTTTTTTCAGCCCTCTTTATTAGACTCCGATCGAGGCGTTTCTTCTTCCTCCTCTTTGGCTTTCCAACCCAAGTTGGAGCTCCCTTCAAGCCAGTATTATAAACCACCCCATGAGCAAGACATTAAGCTTGACATTGAGTTCAATGATCCTTCTTTTCAAAGTAGTAGTAGTGGCTTTCTGGGGGATCTTCTCTTCGAGGCTCAGGCAATGGCTTCAGGCCAGAACTCAAAGAAACGAGGTTACTTGAGTTTGAATGAGAGAAATGATGTGTTTGATGCATGCCAAAGCTTTGAGAACTTTCCATCTAGCTCTCTTTACTGGCCTTCTTCAACTTCTGAACCAAAACCAAAGGAAGAGGCACCGGACTTCAGTAAATTCATGAATGAGGAGGTGTCATCATTGCTTACAGTGGTTCCATCTTCCAGTATGCATGGTCATGAGTGGCACAATAACAGTGCCACAGAAGTGTCCAATGTCCAATCGTCTGGTAGTGGCAAGACAGATGACAATTTTGTACTTGATATCAAACCCATAACTTCATTGTTTCCTCTCTCCAACACCGCAAGCCATGATGAAAACCAAGGATGCTACTCTTGGGACAATTTACCTGGTCTCTTCTAA

Predicted protein sequences of Glyma18g10921

Limit To All Plant Sequences

>Glyma18g10921.1   sequence type=predicted peptide   gene model=Glyma18g10921   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGMANICDDATDGDNAFLTMFGGDESGGSGGSGGRSGGDQGGGNVEDVALKKGPWTTAEDAILTDYVTKHGEGNWNAVQRNTGLNRCGKSCRLRWANHLRPNLKKGAFSPEEEKIIVDLHSQFGNKWARMAALLPGRTDNEIKNYWNTRIKRRQRQGLPLYSDEHDHNHRSTTPTSPTTPSPCLTPTGSNPNIATSFEFFNQNQQQQQQYQHQYQYQQQQHPLSPTASHHSPLSSPLQHRQPFTSSSPHNFLDHSPLPLSSSSPSPLSFSFQKPAPMLSTPLRFKRYRTSPSYNNHLSDPPLTTQFPHLDGFRFPVSSGFSQFFQPSLLDSDRGVSSSSSLAFQPKLELPSSQYYKPPHEQDIKLDIEFNDPSFQSSSSGFLGDLLFEAQAMASGQNSKKRGYLSLNERNDVFDACQSFENFPSSSLYWPSSTSEPKPKEEAPDFSKFMNEEVSSLLTVVPSSSMHGHEWHNNSATEVSNVQSSGSGKTDDNFVLDIKPITSLFPLSNTASHDENQGCYSWDNLPGLF*

>Glyma18g10921.2   sequence type=predicted peptide   gene model=Glyma18g10921   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGMANICDDATDGDNAFLTMFGGDESGGSGGSGGRSGGDQGGGNVEDVALKKGPWTTAEDAILTDYVTKHGEGNWNAVQRNTGLNRCGKSCRLRWANHLRPNLKKGAFSPEEEKIIVDLHSQFGNKWARMAALLPGRTDNEIKNYWNTRIKRRQRQGLPLYSDEHDHNHRSTTPTSPTTPSPCLTPTGSNPNIATSFEFFNQNQQQQQQYQHQYQYQQQQHPLSPTASHHSPLSSPLQHRQPFTSSSPHNFLDHSPLPLSSSSPSPLSFSFQKPAPMLSTPLRFKRYRTSPSYNNHLSDPPLTTQFPHLDGFRFPVSSGFSQFFQPSLLDSDRGVSSSSSLAFQPKLELPSSQYYKPPHEQDIKLDIEFNDPSFQSSSSGFLGDLLFEAQAMASGQNSKKRGYLSLNERNDVFDACQSFENFPSSSLYWPSSTSEPKPKEEAPDFSKFMNEEVSSLLTVVPSSSMHGHEWHNNSATEVSNVQSSGSGKTDDNFVLDIKPITSLFPLSNTASHDENQGCYSWDNLPGLF*

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