SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G20480 | AT | Annotation by Michelle Graham. TAIR10: tetraacyldisaccharide 4'-kinase family protein | chr3:7151835-7153369 REVERSE LENGTH=363 | SoyBase | E_val: 2.00E-67 | ISS |
| GO:0009245 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid A biosynthetic process | SoyBase | N/A | ISS |
| GO:0019243 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate | SoyBase | N/A | ISS |
| GO:2001289 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid X metabolic process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0009029 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: tetraacyldisaccharide 4'-kinase activity | SoyBase | N/A | ISS |
| PF02606 | PFAM | Tetraacyldisaccharide-1-P 4'-kinase | JGI | ISS | |
| UniRef100_G7IY45 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Tetraacyldisaccharide 4'-kinase n=1 Tax=Medicago truncatula RepID=G7IY45_MEDTR | SoyBase | E_val: 2.00E-103 | ISS |
| UniRef100_I1N0N1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1N0N1_SOYBN | SoyBase | E_val: 7.00E-152 | ISS |
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Glyma18g10860 not represented in the dataset |
Glyma18g10860 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g095300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g10860.2 sequence type=CDS gene model=Glyma18g10860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTCGTCCACTAGTTTCCGTCGCTAAAACGCTTTTTTCTAGTAGTGGGTGCAGGCATGATGAAGTTCCTGAAGCACAGGATTTCCGTCAAGGAGAAAAAATCACACCTTTGGGTTGTTGTCCTTGGTCAGCCTTCACCATAAGGCAAGTGGGTTATGGTGGTGGGGATGAAGTCAACATGCTTCGGAGGCTTTTACTTGGGACACCAACTAAGTTTGGTGTTGGTGCTAATGGAGCTGGTGTTGCAAGTCATTTTATCCAAAAATATGGCTGCATTGATATTGATAAGAGTTCATGGCATGAGAAACAATACCTTGATCAGAAGGTCCAGGATTCTCTTGATTCAGAAAAAGTTGGGGTTGTAGTTCTTGATGATGCAATGGTTAATGGATTAACTCTTTGGGGTAACCTTCAACTGCTTCCATGTGGACCATTAAGGGAACCTTTGACTGCACTTAGACGAGCAGATGCAGTTGTAATCCATCATGCAGACTTGGTTTCTGAGCATACTCTCAAGGATATTGAATCAATAGTCCTAGGGATTGAAAAGTCTGTTCCTATTTTCTTAATAAAAATGGATCCAACTTACTTATTTGAGGTGGGAACTATCAATGTCAAAATACTATTGACGGCTCTTCATGAAGCTACTATATTATGTGTCTCTGCTATAGGTTCTGCAGAGCCTTTTGTGAAGCAGATTCAGAAGATGGGAGCACTTTACGTTGATCGAATAGATTTCAGTGATCATCACCTACTCCTTGCCAGGATACATTTTTCCCCTCCTGAATTTGGAAGTACTAATTTGTTGATGAATACTATGTTACTTCAGATCAACATTTAA
>Glyma18g10860.2 sequence type=predicted peptide gene model=Glyma18g10860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFRPLVSVAKTLFSSSGCRHDEVPEAQDFRQGEKITPLGCCPWSAFTIRQVGYGGGDEVNMLRRLLLGTPTKFGVGANGAGVASHFIQKYGCIDIDKSSWHEKQYLDQKVQDSLDSEKVGVVVLDDAMVNGLTLWGNLQLLPCGPLREPLTALRRADAVVIHHADLVSEHTLKDIESIVLGIEKSVPIFLIKMDPTYLFEVGTINVKILLTALHEATILCVSAIGSAEPFVKQIQKMGALYVDRIDFSDHHLLLARIHFSPPEFGSTNLLMNTMLLQINI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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