SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g10750

Feature Type:gene_model
Chromosome:Gm18
Start:9607009
stop:9611334
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g10750
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G40710AT Annotation by Michelle Graham. TAIR10: zinc finger (C2H2 type) family protein | chr5:16295091-16296810 FORWARD LENGTH=272 SoyBaseE_val: 6.00E-112ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR21385Panther ZINC FINGER PROTEIN-RELATED JGI ISS
UniRef100_D9ZIT9UniRef Annotation by Michelle Graham. Most informative UniRef hit: C2H2L domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZIT9_MALDO SoyBaseE_val: 2.00E-124ISS
UniRef100_I1N0M5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N0M5_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g10750
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g10750 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g094500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g10750
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g10750
>Glyma18g10750.1   sequence type=CDS   gene model=Glyma18g10750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGCTTTCGGATCATCGATTGTTTCTTCTCTGCATTGTTTGTGGCCTTTACTTTTCTCTGCAGTTCACAACGGGTCATGCAGATTCAAATGCTGGAAGAACTTTGAATCAGGAGGGTGGTGATCATCAAATACATTGCTCTAGAGAAAGAAGTAGAACAGCTTGGAAAATCATTCAAGAGTATTTGATGCCCTTTGTGGAGAAAGAAAAATACCACATCTCAAAAAGGTGTAGGCTTCACCCTGACAATGACATATACAGAGATCAGGAGCAACATAAGTTTCATACAGATATAAACGAATGGCAGTGTGGGTTCTGTAAGAAAAGTTTCTATGAAGAGAAACATCTTGACCAGCATTTTGACAACAGACACTCCAATTTGCTTAATTTGAGTGAAAGCCAGTGCATAGCAGATGTTTGTGGTGCACTGCACTGTGACCATGAAATGAATTCTGGATCAAAAAAATCAAAGTGCAATCCTGCTGCTGCTGCAAAAAATAAACATCTATGTGAGAGCTTAGCCGATAGTTGTTTTCCTGTCACTGAGGGCCCTGCGGCAAGCCGACTTCATGAATTCTTCTTGCACCAATTCTGTGATGCACACAGCTGCACTGGAAATAGGAAACCTTTCTCCAGAGGGCGCAGGAAGAAGACAAATGTGTTCTACATCTTTGTGTCTATTTTGCTTGTGATACTGCTGCTACTATACTACCTCTACATTTACTTATATCAGAGAGGAATGAAAAGGGAAACTCAAGTGCTGAAGCGCGTCTCACAAGCCAGCAGAAAGAAAAAGCCATCTTAA
Predicted protein sequences of Glyma18g10750
>Glyma18g10750.1   sequence type=predicted peptide   gene model=Glyma18g10750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWLSDHRLFLLCIVCGLYFSLQFTTGHADSNAGRTLNQEGGDHQIHCSRERSRTAWKIIQEYLMPFVEKEKYHISKRCRLHPDNDIYRDQEQHKFHTDINEWQCGFCKKSFYEEKHLDQHFDNRHSNLLNLSESQCIADVCGALHCDHEMNSGSKKSKCNPAAAAKNKHLCESLADSCFPVTEGPAASRLHEFFLHQFCDAHSCTGNRKPFSRGRRKKTNVFYIFVSILLVILLLLYYLYIYLYQRGMKRETQVLKRVSQASRKKKPS*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo