Glyma18g10210 - SoyBase

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Report for Sequence Feature Glyma18g10210

Feature Type:	gene_model
Chromosome:	Gm18
Start:	9028056
stop:	9034344
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g10210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G24830	AT	Annotation by Michelle Graham. TAIR10: zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein \| chr2:10576993-10579154 REVERSE LENGTH=497	SoyBase	E_val: 2.00E-174	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG2185	KOG	Predicted RNA-processing protein, contains G-patch domain	JGI		ISS
PTHR23329	Panther	TUFTELIN-INTERACTING PROTEIN 11-RELATED	JGI		ISS
PTHR23329:SF2	Panther	ZINC FINGER CCCH-TYPE WITH G PATCH DOMAIN PROTEIN	JGI		ISS
PF01585	PFAM	G-patch domain	JGI		ISS
UniRef100_B9RNS4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9RNS4_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1N0J9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N0J9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g10210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g10210

Paralog	Evidence	Comments
Glyma08g43320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g10210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g091000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g10210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g10210

Limit To All Plant Sequences

>Glyma18g10210.1   sequence type=CDS   gene model=Glyma18g10210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAGCGAAGAAGAGAGGGTTCTTGAGAATCAACTGGAACTTCAATTGCAAGAGCAAAGGGATTCTCTCTCTGCTATCGGTCAAGCTCTTCTCTCTGATCCAACTAACCCTGAACTTCTGGCGGTTCATGAGGAGCTTGTTCAGGCAATTAAGGATGCAGAAGAAGGACTTCTTCACCTAAAACGTGCACGATTGTTACAGGAAGCAGATTCAGTGCTGCATAACACTAATATTTTTACTGAAGAAGAGAAAGTGGAGCCCCTTGATTCCACAGATGTTGAACCAGAGCCATTAGAGGACAAGTGTTATTCTGTTGGATCTAAATGTAGATTCCGTCACAAAGATGGACGTTGGTACAATGGTCAAGTGGTGCAGTTGGATAATGCAGTGGCAAAAGTTTCATTTCTTACTCCTACTTCTGAGAATATGTTGATGTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTAGTAACTGTCGCCTATCACATGGACTTGATGTTCAATTGTCTGCTCTTAAGAAATATGTGCCTACAATCTGGAAGCAGTCTCTTGTGGGGTCAAGTATATGGGCAGTCTCAACTGCAAATGCAGGCACTTGGAGAGAAGCCGAGCTCGAGTCCTTGGACGAAAAAGCTGGAGTTGGACAAGTTGTTTTCCGAGACAACGGAAGTTCTGTGAAAGTTGGTGCTGAAGAAATGGCGCTGTCTGAGCATGCAGAAATGAGTGACTTGGAGAGCGATTCCAGCTTAGTACAATCTGATTCCAGTGACTACGAGGAAGAGGAACCACAAGGTTTAGGATTTCTGGAGAGTACCAACCTACGGAGAGGTATTCAGACCGAAACTGCAACATTTGCCACGTGGGAGAACCACACTAGAGGCATAGCTTCCAAGATGATGGCTAATATGGGGTACAGAGAAGGAATGGGTTTAGGTGTAACCGGTCAGGGAATGCTGGACCCTATACCAGTGAAGGTGCTACCACCAAAGCAGTCCTTAGATCACGCACTGGAGTCTCATAAAAGGGAAGGGAAGGAAGGCAAGAAGAAAAGGAGCCGAGGTGGCAAAAGAAAACGTGAGAAGAAATTTGCAGAAGTGAATCGTGCAGCAAAAGAGGAAGAAGAATCGGCATCAGATGTCTTTGCATTAATAAACAATCACCTGGCAATGCACAGTGAGGCTTTTGGCAGTGGATCAATGAAGAAGCAGCAAAGTAAAGGTTCTGAGGAAGGTAAAAAGGTGGATAGACGGGCATTGGTTGCTTATGAGGAAGAGGTGAAGGATTTGAAGATGAGGGTTGAAAAGCTTGAGCACATTGTGAATGCCAATAGAAAAGAGAAGGCTGTGTATGAGGGTGCTATGAGAAAATTAAATGAAACCCGCAAGGCTTTGGCAGATGCTGAAGCAGTTCATGCCTCTGCCTCAAATTCAGTAACAAGCAAAGAAAAAGAGAAGAGATGGCTCAAGTTTTAG

Predicted protein sequences of Glyma18g10210

Limit To All Plant Sequences

>Glyma18g10210.1   sequence type=predicted peptide   gene model=Glyma18g10210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSEEERVLENQLELQLQEQRDSLSAIGQALLSDPTNPELLAVHEELVQAIKDAEEGLLHLKRARLLQEADSVLHNTNIFTEEEKVEPLDSTDVEPEPLEDKCYSVGSKCRFRHKDGRWYNGQVVQLDNAVAKVSFLTPTSENMLMCKFFLQQRCRFGSNCRLSHGLDVQLSALKKYVPTIWKQSLVGSSIWAVSTANAGTWREAELESLDEKAGVGQVVFRDNGSSVKVGAEEMALSEHAEMSDLESDSSLVQSDSSDYEEEEPQGLGFLESTNLRRGIQTETATFATWENHTRGIASKMMANMGYREGMGLGVTGQGMLDPIPVKVLPPKQSLDHALESHKREGKEGKKKRSRGGKRKREKKFAEVNRAAKEEEESASDVFALINNHLAMHSEAFGSGSMKKQQSKGSEEGKKVDRRALVAYEEEVKDLKMRVEKLEHIVNANRKEKAVYEGAMRKLNETRKALADAEAVHASASNSVTSKEKEKRWLKF*

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