Glyma18g10180 - SoyBase

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Report for Sequence Feature Glyma18g10180

Feature Type:	gene_model
Chromosome:	Gm18
Start:	8986195
stop:	8992261
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g10180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G20300	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF3537) \| chr3:7079832-7081809 REVERSE LENGTH=452	SoyBase	E_val: 0	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0042538	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PF12056	PFAM	Protein of unknown function (DUF3537)	JGI		ISS
UniRef100_I1N0J7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N0J7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8VXV8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT3g20300/MQC12_5 n=2 Tax=Arabidopsis thaliana RepID=Q8VXV8_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g10180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g10180

Paralog	Evidence	Comments
Glyma08g43380	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g10180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g090800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g10180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g10180

Limit To All Plant Sequences

>Glyma18g10180.1   sequence type=CDS   gene model=Glyma18g10180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAATTACATATGTAAAATTCGAGTTTAAAGCATCGTCAATCGCCAGCGAAGCTATTTATTTTCGCTCTTCCAAACTCCCCACACGCCACAACCATTCCCATTCGCAACTCCCAATGAAAGACACCACCACCACCGCCACCGCCTCCACGGCGCTGCTAGATCGCCGTGGCAAGTACAACCGCAGCGTCTCCAACTTGAACGACGAGTTCCACACGTTCCGCTCCTACATCCGGTGGATGTGCGTGGACCAGTCCAACCCCTTCACCGCCGCGCTCTCATGGTCCCTGTTCCTCCTCCTTGCCGTCGCCGTCCCCGCCGCGTCGCACTTCCTCCTCGCCTGCCCCGACTGCGACGCCCGTCACTCTCGCCCTTACGACGCCGTCGTCCAGCTCTCTCTCACCTCCGTCTCTGCCCTCTCCTTCCTCTGCCTCGCCGTCTTCGTCCGCAAGTACGGCCTCCGGAGGTTCCTCTTCTTCGATAAGCTCTGCGATGAGAGCGAGACCGTCAGAACCAACTACATGGCGCAGCACAATAGGTCACTGAAGATCCTTTCGGTGTTTGTGGGGCCATGTTTCGTGGCCGAGTGTGCATACAAGATATGGTGGTACACATCCGGAGCCCCACAGATCCCCTTCTTAGGAAACGTGTACGTGAGCGATGCGGTGGCGTGCATACTAGAACTGTGGTCGTGGCTGTACCGAACCACGGTGATCTTCCTGGTGTGCGTTCTGTTCCGTCTGATCTGCCACCTCCAGATCCTGCGGCTCTGCGACTTCGCAAGGTTCTTCCACGTGGACTCCGACGTGGCATCGGTGATGTCGGAGCACCTTAGGATCAGGAGGCACCTGCGAATCATAAGCCACAGGTTCCGCGCGTTCATCCTACTCGCGCTTGTATTGGTCACCGGAAGCCAGTTCGCGTGCCTCCTGGTTACTACTAAGCATACGAAAGACATGAACATTTACAAGACCGGTGAACTTGCGCTGTGCTCAGTTACACTCCTTTCTGCGTTGTGCATCTTGTTGCGTAGTGCAACGAAAATAACACACAAAGCCCAAGCGATCACGGGGCTTGCTGCCAAGTGGCATGTGTGTGCGACGTTGGATTTTGATGGAGTTTTAACGGAAGGTGGGACACCAACGGCTCCTCAGAGTTCCCATGAAACAATGTTTCCTAATGTGGGAACGGATGGGGAATCAGAGACTGATGAAGCTGGTGATGAAGAAGATGAAATTGATACTACCAAGTTGATCCCATCCTATGCTTATAGCACCATCTCTTATCAGAAGAGACAAGCTCTTGTAAAATACTTTGAGAATAATAGGGCAGGGATTACAGTATATGGATTCATGTTGGATAGGAGCACACTCAACACTATATTTGGCATTGAACTGTCGTTAGTTCTTTGGCTGCTTGGGAAAACCATAGGCTTCTCTTGA

Predicted protein sequences of Glyma18g10180

Limit To All Plant Sequences

>Glyma18g10180.1   sequence type=predicted peptide   gene model=Glyma18g10180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVITYVKFEFKASSIASEAIYFRSSKLPTRHNHSHSQLPMKDTTTTATASTALLDRRGKYNRSVSNLNDEFHTFRSYIRWMCVDQSNPFTAALSWSLFLLLAVAVPAASHFLLACPDCDARHSRPYDAVVQLSLTSVSALSFLCLAVFVRKYGLRRFLFFDKLCDESETVRTNYMAQHNRSLKILSVFVGPCFVAECAYKIWWYTSGAPQIPFLGNVYVSDAVACILELWSWLYRTTVIFLVCVLFRLICHLQILRLCDFARFFHVDSDVASVMSEHLRIRRHLRIISHRFRAFILLALVLVTGSQFACLLVTTKHTKDMNIYKTGELALCSVTLLSALCILLRSATKITHKAQAITGLAAKWHVCATLDFDGVLTEGGTPTAPQSSHETMFPNVGTDGESETDEAGDEEDEIDTTKLIPSYAYSTISYQKRQALVKYFENNRAGITVYGFMLDRSTLNTIFGIELSLVLWLLGKTIGFS*

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