Glyma18g10060 - SoyBase

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Report for Sequence Feature Glyma18g10060

Feature Type:	gene_model
Chromosome:	Gm18
Start:	8845003
stop:	8849772
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g10060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G16240	AT	Annotation by Michelle Graham. TAIR10: syntaxin of plants 51 \| chr1:5555183-5556340 REVERSE LENGTH=232	SoyBase	E_val: 3.00E-121	ISS
GO:0000902	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell morphogenesis	SoyBase	N/A	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0006891	GO-bp	Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0010008	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome membrane	SoyBase	N/A	ISS
GO:0005484	GO-mf	Annotation by Michelle Graham. GO Molecular Function: SNAP receptor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG3202	KOG	SNARE protein TLG1/Syntaxin 6	JGI		ISS
PTHR12380	Panther	SYNTAXIN	JGI		ISS
PTHR12380:SF7	Panther	SYNTAXIN 51	JGI		ISS
PF05739	PFAM	SNARE domain	JGI		ISS
UniRef100_G7J036	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Syntaxin-52 n=2 Tax=Medicago truncatula RepID=G7J036_MEDTR	SoyBase	E_val: 3.00E-150	ISS
UniRef100_I1N0I7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N0I7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g10060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g10060 not represented in the dataset	Glyma18g10060 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g10060

Paralog	Evidence	Comments
Glyma08g43480	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g10060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g089600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g10060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g10060

Limit To All Plant Sequences

>Glyma18g10060.2   sequence type=transcript   gene model=Glyma18g10060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAATCGCTACCACTATATAAAACTCGTAAATCCAACTCTTACTTTTCCAACTGTTTACAACAATAACTTGTAACTCGCGTAGTGCACGGGACAGCTTAAACGACGCCGCGCTGATCAACGACTCCTTACGTAAACGACGACGGTGTCAGACAAACGGTGCCGGTTGGTGGTGCCGCCACGCTATTACGCTAATCGTATCCATCACCCTCATCAAAACCCCTCCTTTCTCTTAATTTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGCGGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGTGAAACTTGCTGATGATATCACTGGCATGATTTCTGAACGTAGTTCATTCCCTGCATCTGGACCAGAAACCCAGCGACATGCATCTGCTATAAGAAGGAAGATCACGATATTGGGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAAAACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGACAAAAGTTAACCAAATGGCTTCAACATTGAACATGTCAAACTTTGCAAATAGGGATAGTTTGTTTGGGCCAGAAATAAAATCAGATGCAATGAGCAGAACTGTTGGCCTGGACAACAGTGGACTAGTTGGTCTTCAACGGCAAATTATGAAAGAGCAAGACGATGGCCTTGAGAAATTGGAGGAGACTGTAATCAGTACTAAACATATTGCGTTGGCTGTGAATGAAGAGCTGAATCTACATACCAGACTCATTGATGACTTGGACCAACATGTAGATGTTACAGATTCTCGGCTGAGGAGAGTGCAGAAGAACTTGGCAGTGTTAAACAAACGCACCAAGGGTGGTTGCTCCTGCTTGTGCATGCTTTTATCAGTCATTGGTATAGTGGGTTTGGTTGTTGTCATATGGCTGCTGGTCAAATATTTGTAAAGATAAAAATACCCAAACTCGTGAAGTTTCTCTTTATGTTTCTGAATGTGTGCACTGAAACATGATTGATTTTTCTTGGTGCTTTGGCAATGACATGGAATTTATCAAGGTATTGAAAGGCTTTATTATGTAATTGTCAGATTTGAAATGTTGATACCCTTGAGTTCTCTTTGTAAAAATCAGTAAATTGAGGTGACTTCCATTAATGACTTGAGCTCTTGCACTCTGAGCGTTTGCGTGGGTGGGAAGGGAAATAATATGTATTGCAGAAGCTGCAATTTCGTTTTCCTTTTTGGCTCAGAACCTCTGATAAAATGCTAAGGTTCTTTAATATGCATCTATTCGAAGTTATGGAGTAGGTTCTAATTACAAATTGTGGAAATA

>Glyma18g10060.3   sequence type=transcript   gene model=Glyma18g10060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTCCAACTGTTTACAACAATAACTTGTAACTCGCGTAGTGCACGGGACAGCTTAAACGACGCCGCGCTGATCAACGACTCCTTACGTAAACGACGACGGTGTCAGACAAACGGTGCCGGTTGGTGGTGCCGCCACGCTATTACGCTAATCGTATCCATCACCCTCATCAAAACCCCTCCTTTCTCTTAATTTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGCGGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGTGAAACTTGCTGATGATATCACTGGCATGATTTCTGAACGTAGTTCATTCCCTGCATCTGGACCAGAAACCCAGCGACATGCATCTGCTATAAGAAGGAAGATCACGATATTGGGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAAAACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGACAAAAGTTAACCAAATGGCTTCAACATTGAACATGTCAAACTTTGCAAATAGGGATAGTTTGTTTGGGCCAGAAATAAAATCAGATGCAATGAGCAGAACTGTTGGCCTGGACAACAGTGGACTAGTTGGTCTTCAACGGCAAATTATGAAAGAGCAAGACGATGGCCTTGAGAAATTGGAGGAGACTGTAATCAGTACTAAACATATTGCGTTGGCTGTGAATGAAGAGCTGAATCTACATACCAGACTCATTGATGACTTGGACCAACATGTAGATGTTACAGATTCTCGGCTGAGGAGTGCAGAAGAACTTGGCAGTGTTAAACAAACGCACCAAGGGTGGTTGCTCCTGCTTGTGCATGCTTTTATCAGTCATTGGTATAGTGGGTTTGGTTGTTGTCATATGGCTGCTGGTCAAATATTTGTAAAGATAAAAATACCCAAACTCGTGAAGTTTCTCTTTATGTTTCTGAATGTGTGCACTGAAACATGATTGATTTTTCTTGGTGCTTTGGCAATGACATGGAATTTATCAAGGTATTGAAAGGCTTTATTATGTAATTGTCAGATTTGAAATGTTGATACCCTTGAGTTCTCTTTGTAAAAATCAGTAAATTGAGGTGACTTCCATTAATGACTTGAGCTCTTGCACTCTGAGCGTTTGCGTGGGTGGGAAGGGAAATAATATGTATTGCAGAAGCTGCAATTTCGTTTTC

>Glyma18g10060.4   sequence type=transcript   gene model=Glyma18g10060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTCCAACTGTTTACAACAATAACTTGTAACTCGCGTAGTGCACGGGACAGCTTAAACGACGCCGCGCTGATCAACGACTCCTTACGTAAACGACGACGGTGTCAGACAAACGGTGCCGGTTGGTGGTGCCGCCACGCTATTACGCTAATCGTATCCATCACCCTCATCAAAACCCCTCCTTTCTCTTAATTTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGCGGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGTGAAACTTGCTGATGATATCACTGGCATGATTTCTGAACGTAGTTCATTCCCTGCATCTGGACCAGAAACCCAGCGACATGCATCTGCTATAAGAAGGAAGATCACGATATTGGGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAAAACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGACAAAAGTTAACCAAATGGCTTCAACATTGAACATGTCAAACTTTGCAAATAGGGATAGTTTGTTTGGGCCAGAAATAAAATCAGATGCAATGAGCAGAACTGTTGGCCTGGACAACAGTGGACTAGTTGGTCTTCAACGGCAAATTATGAAAGAGCAAGACGATGGCCTTGAGAAATTGGAGGAGACTGTAATCAGTACTAAACATATTGCGTTGGCTGTGAATGAAGAGCTGAATCTACATACCAGACTCATTGATGACTTGGACCAACATGTAGATGTTACAGATTCTCGGCTGAGGGTAACACTCTTACCATAACTTATTGGGATCATAACACTTGTTTTTAAATATAAGAAAGTTAACTTTTATGAGATGGAGGAGTTTACAATATGCTCAATCTGGTGAAATCATGTGATATCCTCTTGCATTTAATATTCTTAACCTTTTCAGTTAATAAATTCCTTAATTCTGGTAGGTATATTATCTATTAAGATTTTGAGACTGAACCAATTTAACGTCTCAAATATATGCATAAATTCTTTTGTTAGTCTTTGTTGTGGCAGTGTTTACGAATAAAAGTATAGTTACTTGGGATAAAATATACTTCATTATTATATGCTTAGTCAAATATAGACCTGTGGGGATTCTGCTCATGATGTTGCATTCTTTTTT

Coding sequences of Glyma18g10060

Limit To All Plant Sequences

>Glyma18g10060.1   sequence type=CDS   gene model=Glyma18g10060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGGCGCACTATAATGGTTATTTAATAACATTGGGCCAATGCTGTATGTTCAAATCAAGGGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGTGAAACTTGCTGATGATATCACTGGCATGATTTCTGAACGTAGTTCATTCCCTGCATCTGGACCAGAAACCCAGCGACATGCATCTGCTATAAGAAGGAAGATCACGATATTGGGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAAAACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGACAAAAGTTAACCAAATGGCTTCAACATTGAACATGTCAAACTTTGCAAATAGGGATAGTTTGTTTGGGCCAGAAATAAAATCAGATGCAATGAGCAGAACTGTTGGCCTGGACAACAGTGGACTAGTTGGTCTTCAACGGCAAATTATGAAAGAGCAAGACGATGGCCTTGAGAAATTGGAGGAGACTGTAATCAGTACTAAACATATTGCGTTGGCTGTGAATGAAGAGCTGAATCTACATACCAGACTCATTGATGACTTGGACCAACATGTAGATGTTACAGATTCTCGGCTGAGGAGAGTGCAGAAGAACTTGGCAGTGTTAAACAAACGCACCAAGGGTGGTTGCTCCTGCTTGTGCATGCTTTTATCAGTCATTGGTATAGTGGGTTTGGTTGTTGTCATATGGCTGCTGGTCAAATATTTGTAA

>Glyma18g10060.2   sequence type=CDS   gene model=Glyma18g10060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGTGAAACTTGCTGATGATATCACTGGCATGATTTCTGAACGTAGTTCATTCCCTGCATCTGGACCAGAAACCCAGCGACATGCATCTGCTATAAGAAGGAAGATCACGATATTGGGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAAAACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGACAAAAGTTAACCAAATGGCTTCAACATTGAACATGTCAAACTTTGCAAATAGGGATAGTTTGTTTGGGCCAGAAATAAAATCAGATGCAATGAGCAGAACTGTTGGCCTGGACAACAGTGGACTAGTTGGTCTTCAACGGCAAATTATGAAAGAGCAAGACGATGGCCTTGAGAAATTGGAGGAGACTGTAATCAGTACTAAACATATTGCGTTGGCTGTGAATGAAGAGCTGAATCTACATACCAGACTCATTGATGACTTGGACCAACATGTAGATGTTACAGATTCTCGGCTGAGGAGAGTGCAGAAGAACTTGGCAGTGTTAAACAAACGCACCAAGGGTGGTTGCTCCTGCTTGTGCATGCTTTTATCAGTCATTGGTATAGTGGGTTTGGTTGTTGTCATATGGCTGCTGGTCAAATATTTGTAA

>Glyma18g10060.3   sequence type=CDS   gene model=Glyma18g10060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGTGAAACTTGCTGATGATATCACTGGCATGATTTCTGAACGTAGTTCATTCCCTGCATCTGGACCAGAAACCCAGCGACATGCATCTGCTATAAGAAGGAAGATCACGATATTGGGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAAAACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGACAAAAGTTAACCAAATGGCTTCAACATTGAACATGTCAAACTTTGCAAATAGGGATAGTTTGTTTGGGCCAGAAATAAAATCAGATGCAATGAGCAGAACTGTTGGCCTGGACAACAGTGGACTAGTTGGTCTTCAACGGCAAATTATGAAAGAGCAAGACGATGGCCTTGAGAAATTGGAGGAGACTGTAATCAGTACTAAACATATTGCGTTGGCTGTGAATGAAGAGCTGAATCTACATACCAGACTCATTGATGACTTGGACCAACATGTAGATGTTACAGATTCTCGGCTGAGGAGTGCAGAAGAACTTGGCAGTGTTAAACAAACGCACCAAGGGTGGTTGCTCCTGCTTGTGCATGCTTTTATCAGTCATTGGTATAGTGGGTTTGGTTGTTGTCATATGGCTGCTGGTCAAATATTTGTAAAGATAAAAATACCCAAACTCGTGAAGTTTCTCTTTATGTTTCTGAATGTGTGCACTGAAACATGA

>Glyma18g10060.4   sequence type=CDS   gene model=Glyma18g10060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGTGAAACTTGCTGATGATATCACTGGCATGATTTCTGAACGTAGTTCATTCCCTGCATCTGGACCAGAAACCCAGCGACATGCATCTGCTATAAGAAGGAAGATCACGATATTGGGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAAAACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTTCGAATTTGAGGACAAAAGTTAACCAAATGGCTTCAACATTGAACATGTCAAACTTTGCAAATAGGGATAGTTTGTTTGGGCCAGAAATAAAATCAGATGCAATGAGCAGAACTGTTGGCCTGGACAACAGTGGACTAGTTGGTCTTCAACGGCAAATTATGAAAGAGCAAGACGATGGCCTTGAGAAATTGGAGGAGACTGTAATCAGTACTAAACATATTGCGTTGGCTGTGAATGAAGAGCTGAATCTACATACCAGACTCATTGATGACTTGGACCAACATGTAGATGTTACAGATTCTCGGCTGAGGGTAACACTCTTACCATAA

Predicted protein sequences of Glyma18g10060

Limit To All Plant Sequences

>Glyma18g10060.1   sequence type=predicted peptide   gene model=Glyma18g10060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLAHYNGYLITLGQCCMFKSRVMASSSDSWMKEYNEAVKLADDITGMISERSSFPASGPETQRHASAIRRKITILGTRLDSLQSLLSKVPAKTEKEMNRRKDMLSNLRTKVNQMASTLNMSNFANRDSLFGPEIKSDAMSRTVGLDNSGLVGLQRQIMKEQDDGLEKLEETVISTKHIALAVNEELNLHTRLIDDLDQHVDVTDSRLRRVQKNLAVLNKRTKGGCSCLCMLLSVIGIVGLVVVIWLLVKYL*

>Glyma18g10060.2   sequence type=predicted peptide   gene model=Glyma18g10060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSSDSWMKEYNEAVKLADDITGMISERSSFPASGPETQRHASAIRRKITILGTRLDSLQSLLSKVPAKTEKEMNRRKDMLSNLRTKVNQMASTLNMSNFANRDSLFGPEIKSDAMSRTVGLDNSGLVGLQRQIMKEQDDGLEKLEETVISTKHIALAVNEELNLHTRLIDDLDQHVDVTDSRLRRVQKNLAVLNKRTKGGCSCLCMLLSVIGIVGLVVVIWLLVKYL*

>Glyma18g10060.3   sequence type=predicted peptide   gene model=Glyma18g10060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSSDSWMKEYNEAVKLADDITGMISERSSFPASGPETQRHASAIRRKITILGTRLDSLQSLLSKVPAKTEKEMNRRKDMLSNLRTKVNQMASTLNMSNFANRDSLFGPEIKSDAMSRTVGLDNSGLVGLQRQIMKEQDDGLEKLEETVISTKHIALAVNEELNLHTRLIDDLDQHVDVTDSRLRSAEELGSVKQTHQGWLLLLVHAFISHWYSGFGCCHMAAGQIFVKIKIPKLVKFLFMFLNVCTET*

>Glyma18g10060.4   sequence type=predicted peptide   gene model=Glyma18g10060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSSDSWMKEYNEAVKLADDITGMISERSSFPASGPETQRHASAIRRKITILGTRLDSLQSLLSKVPAKTEKEMNRRKDMLSNLRTKVNQMASTLNMSNFANRDSLFGPEIKSDAMSRTVGLDNSGLVGLQRQIMKEQDDGLEKLEETVISTKHIALAVNEELNLHTRLIDDLDQHVDVTDSRLRVTLLP*

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