Report for Sequence Feature Glyma18g10040
Feature Type: gene_model
Chromosome: Gm18
Start: 8833050
stop: 8839287
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g10040
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G04950 AT
Annotation by Michelle Graham. TAIR10: TATA BOX ASSOCIATED FACTOR II 59 | chr1:1403606-1407184 REVERSE LENGTH=549
SoyBase E_val: 0 ISS
GO:0000394 GO-bp
Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation
SoyBase N/A ISS
GO:0006352 GO-bp
Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, initiation
SoyBase N/A ISS
GO:0006366 GO-bp
Annotation by Michelle Graham. GO Biological Process: transcription from RNA polymerase II promoter
SoyBase N/A ISS
GO:0009860 GO-bp
Annotation by Michelle Graham. GO Biological Process: pollen tube growth
SoyBase N/A ISS
GO:0010048 GO-bp
Annotation by Michelle Graham. GO Biological Process: vernalization response
SoyBase N/A ISS
GO:0048573 GO-bp
Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering
SoyBase N/A ISS
GO:0051090 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
KOG2549
KOG
Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA)
JGI ISS
PTHR10221 Panther
TATA BINDING PROTEIN ASSOCIATED FACTOR
JGI ISS
PF02969 PFAM
TATA box binding protein associated factor (TAF)
JGI ISS
PF07571 PFAM
Protein of unknown function (DUF1546)
JGI ISS
UniRef100_G7J040 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: TATA binding protein-associated factor-like protein n=1 Tax=Medicago truncatula RepID=G7J040_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233F0F8 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233F0F8 related cluster n=1 Tax=unknown RepID=UPI000233F0F8
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g10040
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g10040
Paralog Evidence Comments
Glyma08g43490 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g10040 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g089500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g10040
Coding sequences of Glyma18g10040
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g10040.1 sequence type=CDS gene model=Glyma18g10040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGTTTCGTGCCAAAGGAGACAATCGAAGTCATTGCACAGAGCATCGGCATCACCAATTTGTCCTCCGATGTTGCCCTCTCTCTCGCTCCCGATCTCGAATATCGCATTCGCGAAATCATGCAGGAGTCGGTAAAATGCATGCGCCATTCAAAGAGAACTTTTCTTACTACAGAGGATGTGGATACTGCACTTGCATTGAGAAATTTGGAGCCAATATATGGGTTCACATCTAATGATCCTCCACGATTCAAAAGAGCTGCTGGACACAAGGATTTGTTCTACATTGACGACAAAGATGTGGATATCAAAGATATTGTTGAAGCTCCTTTACCAAAAGCACCCCTTGATACATCAATTACTAGTCACTGGTTGGCTATTGAAGGTGTGCAACCTGCAATTCCTGAAAATGCTCCAGTTGAAGCTCCGTCTGAGATAAGAAAATCTGAATTTAAGGAAGACGGGCTTCCTGTTGATGTTAAATTACCTGTTAAACATTTAATAACAAGGGAGCTTCAGCTTTACTACGAGAAAATAACTGACCTAACTTTAAAGAAGCCTGGATCCATTCCTTTTAGAAGAGCATTGGTTAGCTTGTCAGCAGACTCGGGACTCCATCCCTTAGTTCCTTATTTCACATTTTTTGTTGCTGATGAGGTGGCACGGAATTTAAATAATTTAGCTGTTTTATTTGCCTTGATGCGCCTTGTGCGGAGCCTTCTGCAAAATTCTCAGATACACATAGAACTTTATTTACATCAATTGATGCCGCCTATCATTACTTGCATTGTTGCAAAAAGGATAGGAAACAGACTCTCTGATGAGCACTGGGAGCTTAGGAACTTCAGTGCTAATCTTGTTACTTCAATATGCCAAAGATTTGGGCATATTTATCACAATCTGCAGCCACGTGTGATGAAGACATTTCTTCATTCTTTCTTGGACCCTACAAAAGCTTTGCCTCAACACTATGGTGCAATTAAAGGGATAGAAGCTCTTGGATCAAGACTGATTCGCTTGCTTATACTTCCAAATCTCGAGCCATATTTGCATCTTCTTGAGCCAGAAATGCAACCTGAGAAGCAAGAAAACGAAATGAAGAGGCATGAAGCTTGGCAAGTTTATGGGGCTTTGTTGGGTGCAGCAGGACAATGCGTGCATGAAAAGGTCAAAACGTTTGGCAATTTGTTCTCTCCTCCAACTCAGGTTACTTCAAGAGGCAGTGGAAAATCTGTGATTGCGATGCCAGGCAAACGAAAAGCCAGCACCGTTAATCTGATGCAGCAGCAGCAGCTACCTCCAATGAAGAAACTTGTAACAGACGGCACTGGAGGCGCGGTACCAATGAACTCCATGTCAGTTGACATGCAAGGTTCAACAGGTGGATATTCTTCCATGATGGGGGTTTCTTCCATGTCAATGGCTCGTCAAATATCCAATGACAACGTGCCTGGGAGGGATATTGGAGATCAACAAAGGAAGGTGTCCTCCACTCTTGCTCAGGCTTGGAAGGATGATATTGATGCAGGAAATTTGGTGTCATCAGTGGTTGAATTATTTGGGGAAAGTGTGTTGCCGTTTGTTCCAAACCCTGAAGCATATATGTTTTTGTAG
Predicted protein sequences of Glyma18g10040
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g10040.1 sequence type=predicted peptide gene model=Glyma18g10040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSFVPKETIEVIAQSIGITNLSSDVALSLAPDLEYRIREIMQESVKCMRHSKRTFLTTEDVDTALALRNLEPIYGFTSNDPPRFKRAAGHKDLFYIDDKDVDIKDIVEAPLPKAPLDTSITSHWLAIEGVQPAIPENAPVEAPSEIRKSEFKEDGLPVDVKLPVKHLITRELQLYYEKITDLTLKKPGSIPFRRALVSLSADSGLHPLVPYFTFFVADEVARNLNNLAVLFALMRLVRSLLQNSQIHIELYLHQLMPPIITCIVAKRIGNRLSDEHWELRNFSANLVTSICQRFGHIYHNLQPRVMKTFLHSFLDPTKALPQHYGAIKGIEALGSRLIRLLILPNLEPYLHLLEPEMQPEKQENEMKRHEAWQVYGALLGAAGQCVHEKVKTFGNLFSPPTQVTSRGSGKSVIAMPGKRKASTVNLMQQQQLPPMKKLVTDGTGGAVPMNSMSVDMQGSTGGYSSMMGVSSMSMARQISNDNVPGRDIGDQQRKVSSTLAQAWKDDIDAGNLVSSVVELFGESVLPFVPNPEAYMFL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
