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Report for Sequence Feature Glyma18g10023

Feature Type:gene_model
Chromosome:Gm18
Start:8825668
stop:8827382
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g10023
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G55290AT Annotation by Michelle Graham. TAIR10: ATPase, V0 complex, subunit E | chr5:22423037-22424086 REVERSE LENGTH=70 SoyBaseE_val: 4.00E-25ISS
GO:0006661GO-bp Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process SoyBaseN/AISS
GO:0015991GO-bp Annotation by Michelle Graham. GO Biological Process: ATP hydrolysis coupled proton transport SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0033179GO-cc Annotation by Michelle Graham. GO Cellular Compartment: proton-transporting V-type ATPase, V0 domain SoyBaseN/AISS
GO:0015078GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrogen ion transmembrane transporter activity SoyBaseN/AISS
PF05493PFAM ATP synthase subunit H JGI ISS
UniRef100_B3FNQ0UniRef Annotation by Michelle Graham. Most informative UniRef hit: ATP synthase subunit H protein n=1 Tax=Hevea brasiliensis RepID=B3FNQ0_HEVBR SoyBaseE_val: 7.00E-23ISS
UniRef100_UPI000233EF91UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EF91 related cluster n=1 Tax=unknown RepID=UPI000233EF91 SoyBaseE_val: 3.00E-25ISS

Expression Patterns of Glyma18g10023
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g10023 not represented in the dataset
Glyma18g10023 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g10023
ParalogEvidenceComments
Glyma08g43510 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g10023 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g089300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g10023
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g10023
>Glyma18g10023.1   sequence type=CDS   gene model=Glyma18g10023   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTCTTGGTGACGACGCTGATCTTCGTAGTGATCGGAATCATCGCGTGCCTCTGCACCAGAATTTGCTGCAACAGAGGACCTTCTACCAATCTATTTCACCTTACTTTGGTAATTACTGCAACAATTTGCTGCTGGATGATGTAA
Predicted protein sequences of Glyma18g10023
>Glyma18g10023.1   sequence type=predicted peptide   gene model=Glyma18g10023   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFLVTTLIFVVIGIIACLCTRICCNRGPSTNLFHLTLVITATICCWMM*






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