Glyma18g09550 - SoyBase

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Report for Sequence Feature Glyma18g09550

Feature Type:	gene_model
Chromosome:	Gm18
Start:	8455419
stop:	8455756
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g09550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G55460	AT	Annotation by Michelle Graham. TAIR10: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein \| chr5:22468698-22469133 FORWARD LENGTH=109	SoyBase	E_val: 3.00E-18	ISS
GO:0006869	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid transport	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0008289	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lipid binding	SoyBase	N/A	ISS
PF00234	PFAM	Protease inhibitor/seed storage/LTP family	JGI		ISS
UniRef100_I1N0F8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1N0F8_SOYBN	SoyBase	E_val: 1.00E-46	ISS
UniRef100_O24101	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MtN5 protein n=1 Tax=Medicago truncatula RepID=O24101_MEDTR	SoyBase	E_val: 1.00E-16	ISS

Expression Patterns of Glyma18g09550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g09550

Paralog	Evidence	Comments
Glyma08g43605	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g09550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g085700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g09550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g09550

Limit To All Plant Sequences

>Glyma18g09550.2   sequence type=CDS   gene model=Glyma18g09550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATGTTTTATGTGACATAGAGTCAAATAAGCTAAACTTATGTTTTGAAGCAATTACTGGGAACCACCCTCCAAAACCCAATGAAAAATGCTGTGAAGTTGTTAAACATGCCAATTTGCCTTGCTTTTGCAGATACAAGTCTGTCCTACCTGCACTTGGAATCAACCCCGCCAATGCTTTTGCCTTGCCCCATAAATGTGGTCTGAAAACACCACCTGAATGTAGAGTGATTTGA

Predicted protein sequences of Glyma18g09550

Limit To All Plant Sequences

>Glyma18g09550.2   sequence type=predicted peptide   gene model=Glyma18g09550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
HVLCDIESNKLNLCFEAITGNHPPKPNEKCCEVVKHANLPCFCRYKSVLPALGINPANAFALPHKCGLKTPPECRVI*

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