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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G55480 | AT | Annotation by Michelle Graham. TAIR10: SHV3-like 1 | chr5:22474277-22477819 FORWARD LENGTH=766 | SoyBase | E_val: 0 | ISS |
| GO:0000272 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process | SoyBase | N/A | ISS |
| GO:0005982 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch metabolic process | SoyBase | N/A | ISS |
| GO:0006071 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycerol metabolic process | SoyBase | N/A | ISS |
| GO:0006629 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid metabolic process | SoyBase | N/A | ISS |
| GO:0007155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell adhesion | SoyBase | N/A | ISS |
| GO:0009653 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anatomical structure morphogenesis | SoyBase | N/A | ISS |
| GO:0009664 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization | SoyBase | N/A | ISS |
| GO:0009832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0010026 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome differentiation | SoyBase | N/A | ISS |
| GO:0010054 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichoblast differentiation | SoyBase | N/A | ISS |
| GO:0010075 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth | SoyBase | N/A | ISS |
| GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0010442 | GO-bp | Annotation by Michelle Graham. GO Biological Process: guard cell morphogenesis | SoyBase | N/A | ISS |
| GO:0042545 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall modification | SoyBase | N/A | ISS |
| GO:0045010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin nucleation | SoyBase | N/A | ISS |
| GO:0048364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root development | SoyBase | N/A | ISS |
| GO:0048765 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation | SoyBase | N/A | ISS |
| GO:0048869 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular developmental process | SoyBase | N/A | ISS |
| GO:0052541 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall cellulose metabolic process | SoyBase | N/A | ISS |
| GO:0052546 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall pectin metabolic process | SoyBase | N/A | ISS |
| GO:0071555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall organization | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0031225 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane | SoyBase | N/A | ISS |
| GO:0046658 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: anchored to plasma membrane | SoyBase | N/A | ISS |
| GO:0008081 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphoric diester hydrolase activity | SoyBase | N/A | ISS |
| GO:0008889 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glycerophosphodiester phosphodiesterase activity | SoyBase | N/A | ISS |
| KOG2258 | KOG | Glycerophosphoryl diester phosphodiesterase | JGI | ISS | |
| PTHR23344 | Panther | GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE | JGI | ISS | |
| PF03009 | PFAM | Glycerophosphoryl diester phosphodiesterase family | JGI | ISS | |
| UniRef100_G7K4B9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glycerophosphodiesterase-like protein n=1 Tax=Medicago truncatula RepID=G7K4B9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002338C74 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338C74 related cluster n=1 Tax=unknown RepID=UPI0002338C74 | SoyBase | E_val: 0 | ISS |
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Glyma18g09516 not represented in the dataset |
Glyma18g09516 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g43640 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g085400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g09516.1 sequence type=CDS gene model=Glyma18g09516 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGGAAGCCACGTGCCGTTCCCCGTGCTCTCTCTCTGCTTCTTCTTCTTCTTCTTCACTCGGTGCTGGCTCTGGTCTCTGCAAAAGTCACTAACAGTACCACTTGGAACACTCTCACTGGTTCGATATTTCCTGATTCCAGTGATTTGGCCTATATTTTTGCAGTAAGAACTGGTTTAAAAAATCTCATTGCATGGTGTGATGTGCAATTAACGAAAGATAGGCAGGGGATCTGCTTACCAGACATCAAGCTTGAAAATGCTACCAACATTAATTATGCTTTTCCAAATCGAAGTCAGACTTACCCAGTTAATGGTGTACCAACCACGGCTTATTTTGCTGTGGATTATACCCTAGAGGATCTGCGGTCCTATGTCGTCTTGAATCAGGGAGATTATTCTCGAACGACCTTGTTTGATTACAATTTATTTGAAATTCTTACTGTGAGTGACTTGGTTAAAAGAGCAGCCCCGCCAGGATTGTGGTTGAATATTCAGCATGATTTATTCTACACAAAACACAATTTGAGTATGAAAAACTACACACTCTCTGTTTCTAGAACAGTAAATGTTAGTTATATCTCATCACCTGAAGCTGGTTTCCTGAGAAGTATAAGGACACAGATCAACCAAAGAAAAACAAAACTGGTCTTCAGGTTTCTGAAAAAAAATGAAGTAGATCCATCAACCAGTCTCATGTATGGTTCACTATTAAAAAATCTAACATCTATCAAGACATTTGCTTCAGGAATTCTTGTTCCCAAAGAATACATATGGCCTGTACATCCAACAAATCTTTATCTACTTAACCATACATCTTTGGTCTCCGATGCACACAAAGTGGGGCTGGAAGTCTTTGCTTCAGATTTTCAGAATGACATTCCTATCAGCTTTAATTACAGTTATGACCCTGTTGCCGAATACCTGAATTTCATAGACAATGAAAACTTCTCTGTTGATGGTGTGCTGTCTGATTTCCCCCTAACATCATCTGAAGCTATAGACTGCTTTGCTCATGTAGGCCTCAATGCAACAAAGAAAGTTAAAACTTTGGTCATCTCAAAATATGGAGCAAGTGGAGATTATCCTCCTTGTACCAACTTGGCATATGAAAATTCTATTTCAGATGGGGCGGATATTCTTGATTGTCCTGTTCAAATGTCACAGGATGGAATACCATTTTGCTTAAGGTCTATTGATCTTATAGAGAGCACAAATGTTGCTCAAACAATTTTCAGCAACCGTAGCAAAACTATCCCGATCAAATCTGGCAGTGGAATATTTGCATTTGACTTGGCTTGGGAAGATATAAAAAACTTGACCCCCTCAATGTTCCACCCGTATTCCAACTACCATTTGTTTAGGAACCAAGAATACAACAAGCAGGGGAAATTTTTGAGATTGACAGATTTCTTGAACTTGATAAAAGGTCAGACTTCCCTATTAGGTGCTGTGATCATCATTGAGAATGCAGACTATCTTGCAAGAGAAAAAAACTTACGTGTGACTGATGCTGTCATTGATACTTTGAGCAAAGCAGGCTATGATAAACAAGGGGCTCCAAATGTTATGATTCAATCCACTAATAGTTCAGTACTACTGAAATTCAAGGAGAAAACCAATTATGAACTTGTCTACAGGATTGATGAGATAGTTGGTGATGCAGTTGATTCAGCTATTCGGGATATCAAAAGATTTGCTCATTCTGTGATTGTCCAGAAGTCCTCTGTATATCCCCTTAACGACTTCTTCCTGACTGGCTCTACAAAGATTGTGCCAAAGTTCAAATCTTCTAATATCTCTGTTTACGTAGAAACATTCAGCAATGAGTTTGTATCTTCTGCATGGGATTTCTTGTCAGATTCAACCGTGGAGATCAACACATTTGTTCAAGATGCTGAAATTGATGGTGTCATCACAGACTTCCCAAAAACAGCTAATAGATACAGAAGGAACAAATGCTTGAATTTGGGTGAGAACACACCTCCATACATGAAACCAGTTCAAGTAGGTGGCCTTTTCAAACAAATAGCCAAATATTCCTTGCCACCGGCTGTGGCTCCTGCCCCTGCCCTGACTGAAGATGAAGTGACAGAACCCCCTTTGCCTTCTGTTTCTAAAATAGCCCCATCTAGCCCTATTGCTGGGACTGGGCCAGTAGCACAACCACCACGAAATGCACAGACTAAGGTCGCTGTCTGCTTCTTTATGTCCACTCTGTCTCTGCTTGTAGCTTCTCTTCTACTTTGA
>Glyma18g09516.1 sequence type=predicted peptide gene model=Glyma18g09516 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MWKPRAVPRALSLLLLLLLHSVLALVSAKVTNSTTWNTLTGSIFPDSSDLAYIFAVRTGLKNLIAWCDVQLTKDRQGICLPDIKLENATNINYAFPNRSQTYPVNGVPTTAYFAVDYTLEDLRSYVVLNQGDYSRTTLFDYNLFEILTVSDLVKRAAPPGLWLNIQHDLFYTKHNLSMKNYTLSVSRTVNVSYISSPEAGFLRSIRTQINQRKTKLVFRFLKKNEVDPSTSLMYGSLLKNLTSIKTFASGILVPKEYIWPVHPTNLYLLNHTSLVSDAHKVGLEVFASDFQNDIPISFNYSYDPVAEYLNFIDNENFSVDGVLSDFPLTSSEAIDCFAHVGLNATKKVKTLVISKYGASGDYPPCTNLAYENSISDGADILDCPVQMSQDGIPFCLRSIDLIESTNVAQTIFSNRSKTIPIKSGSGIFAFDLAWEDIKNLTPSMFHPYSNYHLFRNQEYNKQGKFLRLTDFLNLIKGQTSLLGAVIIIENADYLAREKNLRVTDAVIDTLSKAGYDKQGAPNVMIQSTNSSVLLKFKEKTNYELVYRIDEIVGDAVDSAIRDIKRFAHSVIVQKSSVYPLNDFFLTGSTKIVPKFKSSNISVYVETFSNEFVSSAWDFLSDSTVEINTFVQDAEIDGVITDFPKTANRYRRNKCLNLGENTPPYMKPVQVGGLFKQIAKYSLPPAVAPAPALTEDEVTEPPLPSVSKIAPSSPIAGTGPVAQPPRNAQTKVAVCFFMSTLSLLVASLLL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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