Glyma18g09490 - SoyBase

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Report for Sequence Feature Glyma18g09490

Feature Type:	gene_model
Chromosome:	Gm18
Start:	8379372
stop:	8386101
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g09490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G55500	AT	Annotation by Michelle Graham. TAIR10: beta-1,2-xylosyltransferase \| chr5:22482386-22484417 FORWARD LENGTH=534	SoyBase	E_val: 0	ISS
GO:0006486	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein glycosylation	SoyBase	N/A	ISS
GO:0006487	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0031204	GO-bp	Annotation by Michelle Graham. GO Biological Process: posttranslational protein targeting to membrane, translocation	SoyBase	N/A	ISS
GO:0000139	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi membrane	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005797	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi medial cisterna	SoyBase	N/A	ISS
GO:0042285	GO-mf	Annotation by Michelle Graham. GO Molecular Function: xylosyltransferase activity	SoyBase	N/A	ISS
GO:0050513	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glycoprotein 2-beta-D-xylosyltransferase activity	SoyBase	N/A	ISS
KOG4698	KOG	Uncharacterized conserved protein	JGI		ISS
UniRef100_G7J1G3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Beta 1 2 xylosyltransferase n=1 Tax=Medicago truncatula RepID=G7J1G3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N0F5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N0F5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g09490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g09490

Paralog	Evidence	Comments
Glyma08g43670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g09490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g085200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g09490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g09490

Limit To All Plant Sequences

>Glyma18g09490.1   sequence type=CDS   gene model=Glyma18g09490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAAAAGAACCACGTTGCTTATTCGAACCCTCTTGTTCCTCTTCGTCCTCAACTCCCTCTATCTCTCCCTCTACTTCACCCACAAACCCTCTTATTCTTCTCCTTCAGAAGAAAAAGAAAAATCAGAACTCGAACCAGACACATACCTAACACCCTTTTCACACGAACCTCACTCTTCAAAGCCATGGCCTATTCTCCCTTCCTACCTCCCCTGGACCACTTCTGCGCGATCCCACTCCTGCGAGGCCTACTTCGGGAACGGCTTCACGCGGCGCCGCGACGCCCTCCTTCCCCGCGGCGGCGCGGGGTGGTTCCGGTGCCACCACAACGACGCGCTCCGTAGCTCGGTGTGCGAGGGCGGGAGGCTGCGCATGGAGCCTGAGAAAATCACGATGGCGAAGGGTGGCGAGGATTTGGCGGCGGTTATGGGGCGCACGGAGGACGAGGAGATGCCCGTGTTTCAAAACGGTGCGTTTCAGGTTGACGGGGGTGAGGTCGCCGTTGACCGGAAGGTTCTGGTTGACCAAGAGTTTTTGGATGAGTATGTGCCAAGGGGAGGGATTGATAGACACACCATGCGGGATTTGATCGCCAAGATTCGGATCGTGAGAGGGAAGGATTTTCAATGTGATGAGTGGATTGAGGAACCAACACTTCTGGTGACACGCTTTGAGTATGCTAATCTTTTTCACACTGTTACAGACTGGTACAGTGCTTATGTTTCTTCTAGAGTCACCGCTCTGCCTAATCGACCTCATGTGATCTTTGTTGATGGCCACTGTAAGGCTCCTCTTGAAGAGACATGGAAAGCCTTATTCTCAAGCGTCAGATATGCTAAGAGCTTCAGTGGTTCAGTTTGTTTTCATCATGCTATTATCTCACCCTTGGGATATGAGACGGCAATGTTTAGAGGGCTTTCAGAACATATAGATTGTTATGGAGCTCCTGCACAAGAACTATTGCAAAACCCTAATGACCACAAAACCGCGCGCCTTTCTGAGTTTGGAGAAATGGTCAGAGCAGCTTTTGGGCTACCTTTAAATGTAAACCATGATGGAAAACCACTCGCTGGACATAATGTCCTCTTTGTTCGTCGCGAAGATTATTTAGCTCATCCACGTCACAGTGGAAAACTTGAATCACGACTAAGTAACGAGCAAGAAGTCTTCGACTCGTTGAAGAGCTGGGCATCCAATTATAAAGGGTGTAAAATTAACCTTGTCAACGGATTGTTTGCTCACATGTCTATGAAGGATCAGGTTCAAGCCATTCATGATGCATCGGTCATCATTGGTGCCCACGGTGCTGGTCTTACTCATATAGTATCTGCATTGCCTAAAACTGTGATTCTGGAGATCATTAGCAGCTATTACAGACGACCACATTTTGCTTATATTTCGCGGTGGAGAGGATTAGAGTATCATGCAATCAACCTTGCTGGATCACATGCTGATCCTGGAGCCGTGATCAAAGAACTGGCGAACATAATGAAAAGCCTTGGATGTTGA

Predicted protein sequences of Glyma18g09490

Limit To All Plant Sequences

>Glyma18g09490.1   sequence type=predicted peptide   gene model=Glyma18g09490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNKRTTLLIRTLLFLFVLNSLYLSLYFTHKPSYSSPSEEKEKSELEPDTYLTPFSHEPHSSKPWPILPSYLPWTTSARSHSCEAYFGNGFTRRRDALLPRGGAGWFRCHHNDALRSSVCEGGRLRMEPEKITMAKGGEDLAAVMGRTEDEEMPVFQNGAFQVDGGEVAVDRKVLVDQEFLDEYVPRGGIDRHTMRDLIAKIRIVRGKDFQCDEWIEEPTLLVTRFEYANLFHTVTDWYSAYVSSRVTALPNRPHVIFVDGHCKAPLEETWKALFSSVRYAKSFSGSVCFHHAIISPLGYETAMFRGLSEHIDCYGAPAQELLQNPNDHKTARLSEFGEMVRAAFGLPLNVNHDGKPLAGHNVLFVRREDYLAHPRHSGKLESRLSNEQEVFDSLKSWASNYKGCKINLVNGLFAHMSMKDQVQAIHDASVIIGAHGAGLTHIVSALPKTVILEIISSYYRRPHFAYISRWRGLEYHAINLAGSHADPGAVIKELANIMKSLGC*

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