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Report for Sequence Feature Glyma18g09430

Feature Type:gene_model
Chromosome:Gm18
Start:8336684
stop:8339292
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g09430
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G59240AT Annotation by Michelle Graham. TAIR10: Ribosomal protein S8e family protein | chr5:23902626-23903670 REVERSE LENGTH=210 SoyBaseE_val: 2.00E-123ISS
GO:0000462GO-bp Annotation by Michelle Graham. GO Biological Process: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) SoyBaseN/AISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0006414GO-bp Annotation by Michelle Graham. GO Biological Process: translational elongation SoyBaseN/AISS
GO:0009165GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process SoyBaseN/AISS
GO:0042254GO-bp Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis SoyBaseN/AISS
GO:0042991GO-bp Annotation by Michelle Graham. GO Biological Process: transcription factor import into nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0022626GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome SoyBaseN/AISS
GO:0022627GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
KOG3283 KOG 40S ribosomal protein S8 JGI ISS
PTHR10394Panther 40S RIBOSOMAL PROTEIN S8 JGI ISS
PF01201PFAM Ribosomal protein S8e JGI ISS
UniRef100_I1N0F1UniRef Annotation by Michelle Graham. Most informative UniRef hit: 40S ribosomal protein S8 n=1 Tax=Glycine max RepID=I1N0F1_SOYBN SoyBaseE_val: 6.00E-157ISS
UniRef100_UPI000233E6CBUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E6CB related cluster n=1 Tax=unknown RepID=UPI000233E6CB SoyBaseE_val: 2.00E-157ISS

Expression Patterns of Glyma18g09430
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g09430
ParalogEvidenceComments
Glyma08g43690 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g09430 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g084800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g09430
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g09430
>Glyma18g09430.1   sequence type=CDS   gene model=Glyma18g09430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTATCTCTCGTGATTCCATGCACAAGAGGCGCGCCACCGGCGGCAAGAAGAAAGCTTGGAGGAAGAAGAGAAAGTATGAGCTTGGGAGGCAGCCAGCAAACACAAAGCTATCAAGCAACAAGACGGTTAGGAGGATTAGGGTTCGCGGTGGGAACGTGAAGTGGCGCGCTTTGAGGCTTGATACTGGGAACTACTCTTGGGGGAGTGAGGCTGCAACCCGCAAGACAAGGATTCTTGATGTGGTGTACAATGCATCCAACAATGAGCTTGTTAGGACTCAGACATTGGTCAAGAGTGCCATTGTTCAGGTCGATGCAGCACCCTTCAAGCAGTGGTATCTGCAGCATTATGGCGTTGAGGTTGGCCGCAAGAAGAAGAGTGCAGCAGCTTCTGCCAAGAAGGAAGGGGAGGATGGTGAAGCTGCAACTGAGGAGGTGAAAAAGAGTAACCATGTTTTGAGAAAATTAGAAAAGCGAAAGCAGAACCGAGTTCTTGATCCTCACATTGAAGAACAATTCGGAGGTGGTCGCCTTTTGGCTTGTATCTCATCTCGACCTGGCCAATGTGGTCGTGCTGATGGATATATATTAGAGGGAAAAGAGCTGGAATTTTACATGAAGAAGCTTCAGAAGAAGAAGGGCAAGGGTGCTGCTTAA
Predicted protein sequences of Glyma18g09430
>Glyma18g09430.1   sequence type=predicted peptide   gene model=Glyma18g09430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAATRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVEVGRKKKSAAASAKKEGEDGEAATEEVKKSNHVLRKLEKRKQNRVLDPHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAA*






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