Glyma18g09380 - SoyBase

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Report for Sequence Feature Glyma18g09380

Feature Type:	gene_model
Chromosome:	Gm18
Start:	8238012
stop:	8239816
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g09380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G60360	AT	Annotation by Michelle Graham. TAIR10: aleurain-like protease \| chr5:24280044-24282152 FORWARD LENGTH=357	SoyBase	E_val: 4.00E-142	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0006816	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium ion transport	SoyBase	N/A	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0006972	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic response	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0007568	GO-bp	Annotation by Michelle Graham. GO Biological Process: aging	SoyBase	N/A	ISS
GO:0009266	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0042744	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0008234	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cysteine-type peptidase activity	SoyBase	N/A	ISS
KOG1543	KOG	Cysteine proteinase Cathepsin L	JGI		ISS
PTHR12411	Panther	CYSTEINE PROTEASE FAMILY C1-RELATED	JGI		ISS
PTHR12411:SF50	Panther	gb def: granule-biosynthesis induced protease gip1p [tetrahymena thermophila]	JGI		ISS
PF00112	PFAM	Papain family cysteine protease	JGI		ISS
PF08246	PFAM	Cathepsin propeptide inhibitor domain (I29)	JGI		ISS
UniRef100_I1N0E7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1N0E7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q1KK73	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cysteine protease n=1 Tax=Medicago sativa RepID=Q1KK73_MEDSA	SoyBase	E_val: 7.00E-153	ISS

Expression Patterns of Glyma18g09380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g09380 not represented in the dataset	Glyma18g09380 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g09380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g084200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g09380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g09380

Limit To All Plant Sequences

>Glyma18g09380.1   sequence type=CDS   gene model=Glyma18g09380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCCGCCACGCTCTCTCCTTCGCCCGCTTCGCTTGTCGCCACGACAAGCGCTACCATTCTGTCGGCGAGATTCGCAACGACTTCCAGATCTTCTCTGATAATCTTAAACTCATCAGATCCACCAACAGGAGGTCTCTCACCTACACGCTTGGCGTCAATCATTTTGCTGACTGGACTTGGGAGGAGTTCACCAGACACAAGCTCGACGCTCCTCAGAATTGCTCTGCCACACTCAAAGGCAACCACAGGCTCACCGATGTTGTTCTTCCTGACGAGAAAGACTGGAGAAAAGAAGGTATAGTCAGCCAAGTTAAAGATCAAGGCAACTGCGGATCTTGCTGGACATTCAGCACAACTGGTGCATTGGAGGCAGCTTACACACAGGCCTTTGGGAAGAATATCAGTCTTTCTGAGCAGCAGCTAGTGGATTGTGCCGGTGCTTTCAATAACTTTGGCTGTAATGGTGGCTTGCCATCCCGGCTTGACACAGAGGAAGCATATCCCTACACCGGAAAAGATGGTGTCTGCAAATTTACAGCTAAAAACATTGCTGTTCAAGTCATTGACTCTATCAATATCACTTTGGGTGCTGAGGATGAATTGAAACAAGTGGTTGCTTTTGTTTGGCCAGTTAGTGTGGCATTTGAGGTAGTGAAGGACTTCCGATTCTACAATAATGGAGTTTACACTAGTACCATTTGTGGTAGCACGCCCATGGATGTAAATCATGTTGTTCTTGCTGTTGGGTATGGAGTTGAAGATGGTGTTCCGTATTGGATCATTAAAAATTCTAATCCTTTATATTGTGGCAAGGGCCTTTTTGATTGTGATACCGAAAGCAATTACAAAAAATTCTAA

Predicted protein sequences of Glyma18g09380

Limit To All Plant Sequences

>Glyma18g09380.1   sequence type=predicted peptide   gene model=Glyma18g09380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
SRHALSFARFACRHDKRYHSVGEIRNDFQIFSDNLKLIRSTNRRSLTYTLGVNHFADWTWEEFTRHKLDAPQNCSATLKGNHRLTDVVLPDEKDWRKEGIVSQVKDQGNCGSCWTFSTTGALEAAYTQAFGKNISLSEQQLVDCAGAFNNFGCNGGLPSRLDTEEAYPYTGKDGVCKFTAKNIAVQVIDSINITLGAEDELKQVVAFVWPVSVAFEVVKDFRFYNNGVYTSTICGSTPMDVNHVVLAVGYGVEDGVPYWIIKNSNPLYCGKGLFDCDTESNYKKF*

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