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Report for Sequence Feature Glyma18g09190

Feature Type:gene_model
Chromosome:Gm18
Start:8054423
stop:8056565
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g09190
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G38770AT Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:16203185-16210253 REVERSE LENGTH=1509 SoyBaseE_val: 5.00E-27ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
PTHR10887Panther DNA2/NAM7 HELICASE FAMILY JGI ISS
PTHR10887:SF5Panther RIBONUCLEASE-RELATED JGI ISS
UniRef100_G7IBG5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Myosin-like protein n=1 Tax=Medicago truncatula RepID=G7IBG5_MEDTR SoyBaseE_val: 6.00E-26ISS
UniRef100_UPI000233EEC7UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EEC7 related cluster n=1 Tax=unknown RepID=UPI000233EEC7 SoyBaseE_val: 8.00E-28ISS

Expression Patterns of Glyma18g09190
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g09190 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g082500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g09190
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g09190
>Glyma18g09190.1   sequence type=CDS   gene model=Glyma18g09190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTACTCGATAGAAATTTGCAGAGACCAAATTTCTTTAAAGCTAGATGATCATGTTAAACTGAGCCCTCTGTACAAGAAAGATGGGGTTGAAGATGATTTAGGAAGTAACCTGTGGCAAGTCTTCTATCACAAGTTTCTCATTCACTTTCTGTCTTGTGCAACTGTCTATCCACAATATCTGATTAATATTCCTTCCCTTCAACTTTTACGTGCTAATCTGTCCAAGAAATTGTCTGTTCTTTCTCCGGAGGAGTTAAGAGATTTTGTTTGCTGTAAGGTATTTACATATACAGATAATCAAGTTCCTCCTCAAGATCATGGCCCCTATCCTCAAGCACTAATTATTGAGACATATACTCCTCCAGATCCTGGCCCCTATCCTCAAGATCAGCCTAAACAAAATTCAGTTCGATTTACACCCACCCAGGTTGAAGCAATCATCTCTGGCATTCAGCCTGGTCTAATTATGGTTGTGGGGCCACCTAGTACAGGAAAGACTGATCAACAAAGTGTAATTAAGAATTAG
Predicted protein sequences of Glyma18g09190
>Glyma18g09190.1   sequence type=predicted peptide   gene model=Glyma18g09190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSYSIEICRDQISLKLDDHVKLSPLYKKDGVEDDLGSNLWQVFYHKFLIHFLSCATVYPQYLINIPSLQLLRANLSKKLSVLSPEELRDFVCCKVFTYTDNQVPPQDHGPYPQALIIETYTPPDPGPYPQDQPKQNSVRFTPTQVEAIISGIQPGLIMVVGPPSTGKTDQQSVIKN*






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