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Report for Sequence Feature Glyma18g09140

Feature Type:gene_model
Chromosome:Gm18
Start:7972558
stop:7976185
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g09140
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G07040AT Annotation by Michelle Graham. TAIR10: NB-ARC domain-containing disease resistance protein | chr3:2226244-2229024 REVERSE LENGTH=926 SoyBaseE_val: 1.00E-87ISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0009626GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type hypersensitive response SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0043531GO-mf Annotation by Michelle Graham. GO Molecular Function: ADP binding SoyBaseN/AISS
KOG4658 KOG Apoptotic ATPase JGI ISS
PTHR11017Panther LEUCINE RICH REPEAT PROTEIN JGI ISS
PTHR11017:SF129Panther JGI ISS
PF00931PFAM NB-ARC domain JGI ISS
UniRef100_C6ZS21UniRef Annotation by Michelle Graham. Most informative UniRef hit: Disease resistance protein n=1 Tax=Glycine max RepID=C6ZS21_SOYBN SoyBaseE_val: 0ISS
UniRef100_UPI000233EFCFUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EFCF related cluster n=1 Tax=unknown RepID=UPI000233EFCF SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g09140
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g09140 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g082200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g09140
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g09140
>Glyma18g09140.1   sequence type=CDS   gene model=Glyma18g09140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGAAACTGCAGTGTCCTTGGCTGGTCAGCATGCGCTTCCAAAAATATTGGAAGCCGTCAAAATGTTGAGAGATCTCCCAAAAGAAGTTAGAGACATTACAGATGAACTTGAAAGCTTTCAAGATTTCATCAATGATGCTGATAAAGTGGCTGAAGCCGAAGAAGATGATGGAAGGCGTCATAGAATAAAAGAAAGGGTGATGCGGCTGAGAGAAACAGCTTTTCACATGGAAGATGCCATCGATGAATATCACATCTCCTGTGAGGATAAGCAACCTGATGATCCTCGATGTGCAGCTTTACTATGTGAGGCTGTTGCCTTCACCAAAACTCAAATCCTTCTCCTTCAAAGTGCGTATAAGATTCAGGATGTTAAATCCCTTGTTCGTGCTGAAAGAGATGGTTTCCAAAGCCATTTTCCTTTAGAGCAAAGACCAACCAGTTCTAGAGGAAATCAAGATGTCACCTGGCAGAAACTTCGAATGGATCCTCTCTTTATCGAGGAAGATGATGTTGTGGGGCTTGATGGCCCTAGAGATACATTGAAAAATTGGTTGACAAAGGGAAGAAAAAAACGCACTGTCATCTTTGTGGTGGGAATTCCTGGGGTGGGAAAAACAACTCTTGCCAAGCAAGTTTATGACCAGGTGCGTAACAATTTCGAGTGCCATGCATTGATCACAGTTTCTCAATCCTACTCTGTAGAAGGATTGCTGAGGCATATGCTGAATGAGATTTGCAAAGAAAAAAAGGAGGACCCTCCCAAGGATGTTTCTACCATCGAGTCGTTGACCGAAGAAGTCAGAAACTGCTTGCGCAACAAGAGGTATGTTGTCTTGTTTGATGACGTATGGAATGGAAAATTTTGGGATCACATTGAATCTGCTGTAATTGATAATAAAAATGGAAGTAGGGTATTAATCACAACCAGGGATGAGAAGGTTGCAGCATATTGTAGGAAATCATCATTTGTTAAGGTGCATAAGCTAGAAAAACCTTTAACTGAAGAAGAATCTTTGAAATTGTTCTGTAAGAAGGCATTTCAGTATAGTTCCGATGGAGATTGTCCAGAAGAACTTGAAGATATATCTCTTGAAATTGTTAGAAAGTGTAAAGGTTTACCTCTAGCAATAGTGTCCATTGGTGGTCTTTTGTCTCAAAAAGATGAAAGTGCACCTGAATGGGGACAGTTTAGTCGAGATCTAAGTTTAGACTTGGAGAGGAATTCTGAGTTAAATAGCATAACAAAAATTTTAGGTTTAAGTTATGATGATTTGCCGATCAATCTCAGATCATGTTTATTGTATTTCGGAATGTATCCGGAGGACTATGAAGTTCAATCTGATAGACTGATTAGACAGTGGATAGCTGAAGGGTTTGTCAAACATGAAACCGGAAAATCTTTGGAAGAAGTTGGGCAACAATATTTATCAGGGTTGGTCCGTAGAAGTTTGGTGCAAGTATCCTCACTTAGAATTGATGGCAAAGTTAAAAGGTGTCGTGTTCATGACTTAATACACAACATGATACTTGGAAAAGTCAAGGATACAGGATTTTGTCAGTATATTGACGAGCGTGATCAATCTGTATCAAGTAAGATTGTTCGATGCCTGACAATTGCAACCGATGATTTTAGTGGAAGTATAGGAAGCTCACCCATTCGGTCAATTTTTATTAGGACAGGAGAAGATGAAGAAGTATCTGAACACTTAGTAAACAAAATCCCTACAAATTACATGCTATTGAAGGTACTTGATTTTGAAGGTTCTGGTTTACGTTATGTTCCTGAAAATTTGGGGAATTTATGCCACTTGAAGTATTTAAGCTTCCGGTATACAGGGATAGAAAGTCTATCAAAATCCATTGGTAAGCTCCAGAATTTGGAGACCTTGGATATAAGAGGCACAGATGTGTCTGAGATGCTAGAGGAGATTACGAAGCTTAAAAAGCTACGTCATCTTCTTAGTTACTATATATCTTCAATTCAATGGAAGGATATTGGAGGCATGACATCCCTACATGAGATACCTCCAGTGATTATTGATGATGATGGAGTGGTCATTAGAGAGGTAGGAAAGCTAGAGCAGTTAAGGGAACTGACAGTGACAGATTTTACGGGAAAACACAAAGAGACTGTGTTTCTTGATAAATGA
Predicted protein sequences of Glyma18g09140
>Glyma18g09140.1   sequence type=predicted peptide   gene model=Glyma18g09140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAETAVSLAGQHALPKILEAVKMLRDLPKEVRDITDELESFQDFINDADKVAEAEEDDGRRHRIKERVMRLRETAFHMEDAIDEYHISCEDKQPDDPRCAALLCEAVAFTKTQILLLQSAYKIQDVKSLVRAERDGFQSHFPLEQRPTSSRGNQDVTWQKLRMDPLFIEEDDVVGLDGPRDTLKNWLTKGRKKRTVIFVVGIPGVGKTTLAKQVYDQVRNNFECHALITVSQSYSVEGLLRHMLNEICKEKKEDPPKDVSTIESLTEEVRNCLRNKRYVVLFDDVWNGKFWDHIESAVIDNKNGSRVLITTRDEKVAAYCRKSSFVKVHKLEKPLTEEESLKLFCKKAFQYSSDGDCPEELEDISLEIVRKCKGLPLAIVSIGGLLSQKDESAPEWGQFSRDLSLDLERNSELNSITKILGLSYDDLPINLRSCLLYFGMYPEDYEVQSDRLIRQWIAEGFVKHETGKSLEEVGQQYLSGLVRRSLVQVSSLRIDGKVKRCRVHDLIHNMILGKVKDTGFCQYIDERDQSVSSKIVRCLTIATDDFSGSIGSSPIRSIFIRTGEDEEVSEHLVNKIPTNYMLLKVLDFEGSGLRYVPENLGNLCHLKYLSFRYTGIESLSKSIGKLQNLETLDIRGTDVSEMLEEITKLKKLRHLLSYYISSIQWKDIGGMTSLHEIPPVIIDDDGVVIREVGKLEQLRELTVTDFTGKHKETVFLDK*






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