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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G55540 | AT | Annotation by Michelle Graham. TAIR10: tornado 1 | chr5:22496322-22500543 REVERSE LENGTH=1380 | SoyBase | E_val: 0 | ISS |
| GO:0009825 | GO-bp | Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth | SoyBase | N/A | ISS |
| GO:0009855 | GO-bp | Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry | SoyBase | N/A | ISS |
| GO:0009926 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin polar transport | SoyBase | N/A | ISS |
| GO:0009933 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem structural organization | SoyBase | N/A | ISS |
| GO:0009956 | GO-bp | Annotation by Michelle Graham. GO Biological Process: radial pattern formation | SoyBase | N/A | ISS |
| GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
| GO:0010014 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem initiation | SoyBase | N/A | ISS |
| GO:0010073 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem maintenance | SoyBase | N/A | ISS |
| GO:0010305 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf vascular tissue pattern formation | SoyBase | N/A | ISS |
| GO:0010540 | GO-bp | Annotation by Michelle Graham. GO Biological Process: basipetal auxin transport | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_G7J1I8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nucleotide-binding oligomerization domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J1I8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N0D7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1N0D7_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma18g09100 not represented in the dataset |
Glyma18g09100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g43730 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g081800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g09100.1 sequence type=CDS gene model=Glyma18g09100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATCAAACCAGATCCTGAAAGAGCTACAATGGGCTCAGCAAGCTATCAAATCTGAGGGCCTAAATCTGCACAGTATTTCCTTCTACCTGTCCCAACCAACCTCAGGCTGCTATCAAGAAACAGACAACTCCATAAGCATAAACATTTCCAAGGAAAACCTTCCATTCTTTTCCCACCTCTTGACAACTCTAGCAGCACCTAGGAGCACCAACTCTTCTTCCTTGAGAAACTTGGAGTTCCACAGAGTTGAATGGGACTCACAAAAGGTAAGAAATCTTGGCACCTTGCTTGGGAATAACCAAAATGTACAACAAGTGGTTTTTAGAAGAAACAGGTTCAATGGAAAAAGCCTGTCAGAGCTTTCTGACATTCTTAAGGCTAATAAAGTGATCAAAGAGATCATGCTTTCAGAATCAGGTATCGGGTCTGTTGGAGCTGGGCTCATTGCTTCTGCTCTTGTGGTGAATGATAGTTTGGAGGAGCTGCAGATATGGGAAGATTCAATAGGGTCAAGAGGTGCTGAGGAGCTCTCCAAGATGATTGAAGTTAACTCAACTCTTAAGCTTTTGACAATTTTTGACTCAAATGCCATCACAGCTACCCCTCTTATATCAGCAGTTTTGGCAAGGAACAGAACGATGGAAGTTCATGTTTGGAGTGGGGAAAATGGGGACAAAAGTTTCAAGGTGGTTGAGTTTGTACCGGAGAACAACACACTTAGAATTTACAAGCTTAACCTCTCAGGTGCATGTAGGGTTATTTGCTCTTTAGGGATGAACTTCACTGTGAAGTCGCTTGACTTGACCGGCGTCAAGCTAAAGTCACAGTGTGCTAAGGAATTTAGGTGGGTTTTGGAACAAAACCAGACCCTCAAAGAGGTAAACTTGTCCAGAACATGCCTTAAAGACAAGGGCATTGTGTATGTTGCAGCTGGCCTCTTTAAGAACAGAAGTCTGCAAACCTTACATCTTAGCGGTAATTGGTTCAATGGAGTAGGTGTGGAGCATCTACTATGCCCTTTGAGTAGATTTTCAGCACTGCAAATGCAAGCCAACACTACTTTGACATGTGTTACTTTTGGAGGAGGGAGGACAAGAATAGGAAGGGATGGTCTAGCTGCTATTATACAGTTTCTAATTAGCAATGAAACAGTGAGGAAGTTGGGGATTCATGATGATGAGAGTTTGAGATCGGATGACTTTGTGAAAATCTTCAAGAGTTTGGAGAAGAATGCTAGCTTGAAATGTTTGTCTGTACAAGGCTGCAAACGTGTGGAGGGAGAGACATTGCTGCATACAATTATGGAGACAATACAGATAAATCCTTGGATTGAAGATATTGATCTCTCAAGAACACCTTTACACAACTCTGGAAAGACTCGGGGAATTTATCAGAGATTAGGCCAGAATGAGAAGACTGAACCAGAAATGGATTTGGTCAAGGACATGCCACTAACAGAACCCAAGAGTTGCAGAGTTTTTTTTTGTGGTCAAGAAAGTGCAGGCAAAACCACACTTTGTCATTCAATATCACAAAATTTCTCTGCTTTATCACTTCCCTACTTGGATCAAGTCAGAACAATTGTGAACCCAGTGGAGCAGGCTGTCAAAGCAGTAGGAATGAAGATAAAAACTTTCAAGGATGAGGATACAAGGATTTCAATATGGAATCTTGCTGGTCAACATGAGTTTTTATCCCTCCATGATCTCATGTTCCCAGGGCATGGGAGTGCATCATTTTTCATCATCATATCAAGTTTATTTAGGAAACCAAGTAACAAAGAACCAAAAAGTTCAACTGAAATTGAAGAAGACCTGCAATATTGGCTCAGGTTCATAGTCTCCAACTCTAAAAGGGCAATACAACAATGCATGCTACCAAGTGTCGCTGTTGTTCTCACACACACTGATAAAATCAACCAACCATCACAAAATTTGCAGCACACAGTAGATTCAATACAGAGATTGAGAGACAAGTTCCAAGGCTATGTTGAATTCAACCCAACTGTATTCACAGTTGATGCAAGATCATCAGCATCAGTTAGTAAACTCACTCATCATATCCGAAAGACAAGCAAGACAATTCTCCAAAGAGTGCCGCGAGTTTATCAACTTTGCAACGATTTGATACAGATTTTATCAGACTGGAGATCTGAGAACTACAACAAGCCAGCAATGAAGTGGAAGGAGTTTGGTGAGCTATGCCAAGTTAAAGTTCCGTTGTTGAGAATTCAATCAAGAAATGAAAATAAAGAGAGGGTGGAAATGAAGAGAAGAGCTATTGCTACCTGTCTTCATCACATTGGTGAGGTGATTTACTTCGATGAGTTGGGGTTTCTAATTTTAGATTGTGAGTGGTTCTGTGGTGAAGCACTTGGTCAGCTGATAAAGTTGAATGTTAGGAAGCAACATTCCTCAGAAAACAATGGATTTGTTAGCAGGAAGGAACTGGAAAAAATCTTAAGAGGAAGTTTGCAGAGCCCTATTCCTGGTATGGGTTCGAAGGTATTTGAGAACTTAGATACTAGTGATCTTGTGAGGATGATGCTAAAACTTGAACTTTGTTATGAGCAAGACCCATCAGATCCAAATTCTCTGCTATTGATTCCTTCCATTCTTGAAGAAGGAAGAGGAAAGCCTCAGAAGTGGCAGCTAAGCATGCCAGACTGTGTTTATGCTGGACGTCACCTCGAGTGTGATGATTCAAGCCACATGTTTCTAACTCCCGGATTCTTCCCTCGTTTACAGGTGCACCTTCACAACAGAATACAGGCTCTAAAGGATCAACATGGGGCAACTTACAGTCTTGAGAAGTGCATCATATCAATCTGCATTAATGGAATCTACATAAGAGTAGAACTTGGAGGACAATTGGGTTACTATATTGATGTCCTTGCATGCTCCACCAAAAACTTGTCTGAAACTTTAAGAGTCATTAATCAACTTATAATCCCTGCAATCCAAAGTGTTTGCCATGGGATCACCTTGACTGAAAATGTCATAAGACCTGAATGTGTGAGAAAACTGACACCCCCTAGATACAGAAAAACTCAATTTGCTTCCATGCAGCAACTTAAACAAGCATTACTTTCACTTCCAGCAGACAGCATGTATGATTATCAACACACATGGAGTCCAGTCCTAGACTCTGGTAGGCCAATTCTCCAAGATGGATTTGATTTTGCTCGGGACCTTTTATCCGATGATGACTTCCGGGAAGTGTTGCATCGAAGGTATCATGACCTGTACAATCTTGCACAAGAGCTGCAAGTCCCACCTGAAAATAACCCTGAAGGGCAAGGTCAATCTATAACCATGAGTAATGAAGCTGCAAAGGTTGAACCAACCTTTGGTGGCATTGCAAAAGGGGTTGAAGCAGTTTTAGAAAGACTCAAGATTATAGAACAAGAAATCAGAGACTTGAAACAGGAAATCCAGGGGCTGAGATACTATGAACATAGACTTCTCCTTGAGCTTCATCGCAGAGTGAACCACCTAGCAACCTTCAATGTCCAGGTTGAGGAGAGGAAAGTCCCCAACATGATCTATTTTGTTAAGACAGAAAACTACACAAGGAGACTGGTCACTGCCATGCTTTCAGGTATGAATGCTCTCCGGCTTCACATGTTATGTGAGTTCCGGGGACAAATGCATGTTGTTGAAGATCAGTTGGGGTGTGAAATCATGCAAGTTGATAATGCGGCTGTGAAGTCTTTGGCTCCATATATGAAGAAGTTCATGACACTGGTAACTTTAGCTCTCAAAATAGGAGCTCATCTTGCAGCAGGGATGGGGCAAATGATACCAGACTTGAGCAAGGAGGTGGCTCATTTGGCTGGCTCTTCAGTTCTCTGTGGTGCAGCTGGGGCAACTGCTGCTGGTGTTGTAGGGGTGGCCGCTATGGATCGTAGAAACAGGTCCATTGAAGGTTCAAGGGACATTCAACAAGACTTAAGAGCAGCACAACAATGGGTGGTTGATTTCTTAAGGGAAAGAAGGTGCTCCTCAGGGAAGGATATTGCAGAGAAATTTGGACTGTGGCGAATAAGGTATAGGGACAATGGTCAAATTGCATGGATATGCAGGCAGCACATGTATGCCAGATCTGCAGAGATAATCGAAGTGCCTGTTTGA
>Glyma18g09100.1 sequence type=predicted peptide gene model=Glyma18g09100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASNQILKELQWAQQAIKSEGLNLHSISFYLSQPTSGCYQETDNSISINISKENLPFFSHLLTTLAAPRSTNSSSLRNLEFHRVEWDSQKVRNLGTLLGNNQNVQQVVFRRNRFNGKSLSELSDILKANKVIKEIMLSESGIGSVGAGLIASALVVNDSLEELQIWEDSIGSRGAEELSKMIEVNSTLKLLTIFDSNAITATPLISAVLARNRTMEVHVWSGENGDKSFKVVEFVPENNTLRIYKLNLSGACRVICSLGMNFTVKSLDLTGVKLKSQCAKEFRWVLEQNQTLKEVNLSRTCLKDKGIVYVAAGLFKNRSLQTLHLSGNWFNGVGVEHLLCPLSRFSALQMQANTTLTCVTFGGGRTRIGRDGLAAIIQFLISNETVRKLGIHDDESLRSDDFVKIFKSLEKNASLKCLSVQGCKRVEGETLLHTIMETIQINPWIEDIDLSRTPLHNSGKTRGIYQRLGQNEKTEPEMDLVKDMPLTEPKSCRVFFCGQESAGKTTLCHSISQNFSALSLPYLDQVRTIVNPVEQAVKAVGMKIKTFKDEDTRISIWNLAGQHEFLSLHDLMFPGHGSASFFIIISSLFRKPSNKEPKSSTEIEEDLQYWLRFIVSNSKRAIQQCMLPSVAVVLTHTDKINQPSQNLQHTVDSIQRLRDKFQGYVEFNPTVFTVDARSSASVSKLTHHIRKTSKTILQRVPRVYQLCNDLIQILSDWRSENYNKPAMKWKEFGELCQVKVPLLRIQSRNENKERVEMKRRAIATCLHHIGEVIYFDELGFLILDCEWFCGEALGQLIKLNVRKQHSSENNGFVSRKELEKILRGSLQSPIPGMGSKVFENLDTSDLVRMMLKLELCYEQDPSDPNSLLLIPSILEEGRGKPQKWQLSMPDCVYAGRHLECDDSSHMFLTPGFFPRLQVHLHNRIQALKDQHGATYSLEKCIISICINGIYIRVELGGQLGYYIDVLACSTKNLSETLRVINQLIIPAIQSVCHGITLTENVIRPECVRKLTPPRYRKTQFASMQQLKQALLSLPADSMYDYQHTWSPVLDSGRPILQDGFDFARDLLSDDDFREVLHRRYHDLYNLAQELQVPPENNPEGQGQSITMSNEAAKVEPTFGGIAKGVEAVLERLKIIEQEIRDLKQEIQGLRYYEHRLLLELHRRVNHLATFNVQVEERKVPNMIYFVKTENYTRRLVTAMLSGMNALRLHMLCEFRGQMHVVEDQLGCEIMQVDNAAVKSLAPYMKKFMTLVTLALKIGAHLAAGMGQMIPDLSKEVAHLAGSSVLCGAAGATAAGVVGVAAMDRRNRSIEGSRDIQQDLRAAQQWVVDFLRERRCSSGKDIAEKFGLWRIRYRDNGQIAWICRQHMYARSAEIIEVPV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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