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Report for Sequence Feature Glyma18g08900

Feature Type:gene_model
Chromosome:Gm18
Start:7631151
stop:7635558
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g08900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G13120AT Annotation by Michelle Graham. TAIR10: Ribosomal protein S10p/S20e family protein | chr3:4220310-4221526 REVERSE LENGTH=191 SoyBaseE_val: 9.00E-76ISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0009902GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast relocation SoyBaseN/AISS
GO:0010027GO-bp Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization SoyBaseN/AISS
GO:0015979GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis SoyBaseN/AISS
GO:0015995GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0034660GO-bp Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0015935GO-cc Annotation by Michelle Graham. GO Cellular Compartment: small ribosomal subunit SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
KOG0900 KOG 40S ribosomal protein S20 JGI ISS
PTHR11700Panther 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER JGI ISS
PTHR11700:SF5Panther SUBFAMILY NOT NAMED JGI ISS
PF00338PFAM Ribosomal protein S10p/S20e JGI ISS
UniRef100_B9S9Q5UniRef Annotation by Michelle Graham. Most informative UniRef hit: 30S ribosomal protein S10, putative n=1 Tax=Ricinus communis RepID=B9S9Q5_RICCO SoyBaseE_val: 3.00E-83ISS
UniRef100_I1N0C3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N0C3_SOYBN SoyBaseE_val: 3.00E-146ISS

Expression Patterns of Glyma18g08900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g08900
ParalogEvidenceComments
Glyma08g43950 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g08900 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g079900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g08900
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g08900
>Glyma18g08900.3   sequence type=CDS   gene model=Glyma18g08900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGTTTCTCTCTCTGTTACTCCTCTTTCTCTCTCCAATTCTTCTCCTTCTCTATCTTCCAAGCCAAAGTTTCCATCTTTGTGCTTTTTCTCTGGCAACAACACCTTGAGGGTCAAATGCCCAAAACCTTCGCACTCAACAACTGTTGTTCATGTTGCTCCAGAAGCGTTGGATTCTTCACTTGATCCCTTAGACCCACCTCCAGAAACCCTTGATGATGACTCTGACGCCACCACCTTTGAGGTTGGTGACTTGGGGACTCCTAGCACTTCGGCAATTAGCATTGGTGGCGATGCAGATACAATGGCACCAAAGCAGAAGATTAGAATCAAGCTTAGATCTTACTGGGTGCCCTTGATAGAGGATTCCTGCAAGCAGATATTAGATGCAGCAAGGAATACCAATGCAAAAACGATGGGACCTGTGCCATTACCAACCAAGAAGCGAATCTACTGTGTTCTTAAATCCCCACACGTACATAAGGATGCTCGGTTCCATTTCGAGATCAGAACACACCAGCGTCTCATTGATATTCTATACCCTACAGCTCAAACAATAGATTCTCTGATGCAACTAGATCTTCCTGCTGGTGTTGATGTGGAGGTCAAGCTCTAG
Predicted protein sequences of Glyma18g08900
>Glyma18g08900.3   sequence type=predicted peptide   gene model=Glyma18g08900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVSLSVTPLSLSNSSPSLSSKPKFPSLCFFSGNNTLRVKCPKPSHSTTVVHVAPEALDSSLDPLDPPPETLDDDSDATTFEVGDLGTPSTSAISIGGDADTMAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL*






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