Report for Sequence Feature Glyma18g08720
Feature Type: gene_model
Chromosome: Gm18
Start: 7461541
stop: 7462666
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g08720
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G13130 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte; Has 140 Blast hits to 132 proteins in 41 species: Archae - 2; Bacteria - 4; Metazoa - 29; Fungi - 20; Plants - 51; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink). | chr3:4223008-4223613 FORWARD LENGTH=201
SoyBase E_val: 3.00E-18 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1N0B2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N0B2_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g08720
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g08720
Paralog Evidence Comments
Glyma08g44071 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g08720 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g078200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g08720
Coding sequences of Glyma18g08720
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g08720.1 sequence type=CDS gene model=Glyma18g08720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATCAAATTAAATCCCACAAAATAGAAGCTTTGATTCAAAGCACAAAATCCCATAACTACATAATTAAGCTTATTCAATTATTGGTCCCATTATCTGTGTTTTCTTTCTTCATTTCTCCATCTTCCTTGCTTGCTTTCCTCTACCACTTCAACCTGTACTTCTCTACATTTTCTTTGCAATTATTTACTCACACCATAGACAAGAATTGCATGTTTCTCCTATGCAATGGTCTCCTTGTATTTGTTGGCATAACAAGATCTTTATCTGGGTCTAGTAGTGTTGCTGAAAGTGAATCTTCTAAATATGTTGAAGATGGATCACAATCTCCATACTCAGATGTTGAGGCTAATGAGGCAATAATCTTGGTGGAGAAGGAAGCCATGGAGAAAATTCATGAGCCTCATGGACAGAAAACAGGAACAGAACATGCAATAGAAATCAAGTACTCTGATGAAGAAGAAGAAGAAGAAGGAGAAGAAAGTATAGGAGACATAATTTTGGAAGGTGAAAAAGAAGAAAAAGGGAATGCAGAATCAGTTTTGACAGAAGAGAATAAGAAGCTATATGGAGAAACTGGACAATTTGGTGCTGAAGATGAAGACAGGGAGTCAGAAATTGATGAGTTTCTGATTGGAGAAAGTGTTGAAGAAGAGGTTGTAGAAGAACCAAACTGGGTGTTAAGTACTGAGGAGTTGAACAAAAAATTTGATGACTTCATTAGAAAGATGAAGGAAGATTTGAGGATCGAGGCTCAAAGACAATTACTCATGGTTTGA
Predicted protein sequences of Glyma18g08720
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g08720.1 sequence type=predicted peptide gene model=Glyma18g08720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDQIKSHKIEALIQSTKSHNYIIKLIQLLVPLSVFSFFISPSSLLAFLYHFNLYFSTFSLQLFTHTIDKNCMFLLCNGLLVFVGITRSLSGSSSVAESESSKYVEDGSQSPYSDVEANEAIILVEKEAMEKIHEPHGQKTGTEHAIEIKYSDEEEEEEGEESIGDIILEGEKEEKGNAESVLTEENKKLYGETGQFGAEDEDRESEIDEFLIGESVEEEVVEEPNWVLSTEELNKKFDDFIRKMKEDLRIEAQRQLLMV*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
