Glyma18g08620 - SoyBase

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Report for Sequence Feature Glyma18g08620

Feature Type:	gene_model
Chromosome:	Gm18
Start:	7334096
stop:	7336237
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g08620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G14540	AT	Annotation by Michelle Graham. TAIR10: nuclear factor Y, subunit B3 \| chr4:8344663-8345148 FORWARD LENGTH=161	SoyBase	E_val: 7.00E-72	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
KOG0869	KOG	CCAAT-binding factor, subunit A (HAP3)	JGI		ISS
PTHR11064	Panther	TATA-BINDING PROTEIN-ASSOCIATED PHOSPHOPROTEIN	JGI		ISS
PTHR11064:SF9	Panther	CCAAT-BINDING TRANSCRIPTION FACTOR SUBUNIT A	JGI		ISS
PF00808	PFAM	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	JGI		ISS
UniRef100_G7K4Q5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nuclear transcription factor Y subunit B-3 n=1 Tax=Medicago truncatula RepID=G7K4Q5_MEDTR	SoyBase	E_val: 1.00E-95	ISS
UniRef100_I1N0A6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N0A6_SOYBN	SoyBase	E_val: 9.00E-134	ISS

Expression Patterns of Glyma18g08620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g08620

Paralog	Evidence	Comments
Glyma08g44140	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g08620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g077500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g08620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g08620

Limit To All Plant Sequences

>Glyma18g08620.1   sequence type=CDS   gene model=Glyma18g08620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGACTCGGACAACGACTCCGGCGGCGCGCACAACGCCGGGAAGGGGAGCGAGATGTCGCCGCGGGAGCAGGACCGGTTCCTGCCGATCGCGAACGTGAGCCGCATCATGAAGAAGGCGCTGCCGGCGAACGCGAAGATCTCGAAGGACGCGAAGGAGACGGTGCAGGAGTGCGTGTCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAGCGGGAGAAGCGCAAGACGATCAACGGCGACGACCTGCTCTGGGCGATGACCACTCTCGGCTTCGAGGACTACGTCGAGCCTCTCAAGGGCTACCTCCAGCGCTTCCGAGAAATGGAAGGAGAGAAGACAGTGGCGGCGCGTGACAAGGACGCGCCTCCTCCTACCAATGCTACCAACAGTGCCTACGAGAGTCCTAGTTATGCTGCTGCTCCTGGTGGAATCATGATGCATCAGGGACACGTGTACGGTTCTGCCGGCTTCCATCAAGTGGCTGGTGGTGCTATAAAGGGTGGGCCTGTTTATCCCGGGCCTGGATCCAATGCCGGTAGGCCCAGGTAG

Predicted protein sequences of Glyma18g08620

Limit To All Plant Sequences

>Glyma18g08620.1   sequence type=predicted peptide   gene model=Glyma18g08620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADSDNDSGGAHNAGKGSEMSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKGYLQRFREMEGEKTVAARDKDAPPPTNATNSAYESPSYAAAPGGIMMHQGHVYGSAGFHQVAGGAIKGGPVYPGPGSNAGRPR*

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