Glyma18g08540 - SoyBase

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Report for Sequence Feature Glyma18g08540

Feature Type:	gene_model
Chromosome:	Gm18
Start:	7272330
stop:	7273872
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g08540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G06600	AT	Annotation by Michelle Graham. TAIR10: ubiquitin-specific protease 12 \| chr5:2019545-2027834 REVERSE LENGTH=1115	SoyBase	E_val: 5.00E-34	ISS
GO:0006007	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose catabolic process	SoyBase	N/A	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004221	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin thiolesterase activity	SoyBase	N/A	ISS
GO:0004843	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-specific protease activity	SoyBase	N/A	ISS
PTHR24006	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24006:SF265	Panther		JGI		ISS
PF00917	PFAM	MATH domain	JGI		ISS
UniRef100_G7LEE7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin carboxyl-terminal hydrolase family protein n=1 Tax=Medicago truncatula RepID=G7LEE7_MEDTR	SoyBase	E_val: 3.00E-79	ISS
UniRef100_I1N0A2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N0A2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g08540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g08540

Paralog	Evidence	Comments
Glyma08g44200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g08540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g076700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g08540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g08540

Limit To All Plant Sequences

>Glyma18g08540.1   sequence type=CDS   gene model=Glyma18g08540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAATAAGAATGGAAAACTTAAATTTGAGAAGTTCACATGGAGGATTCAGAACTTCTCTAAATTGGACTGCAAGAAACTGTGCTCCGACAAGTTTTTGCTTGATCACCATACATGGAGGATTCTTGTCTATCCAAAGGGGGCTGATGTGGGCTACTTGTCAATTTATTTAGATGCTGGTGTTGTTAATTTGCCTTTTGGCTGGAGCAAATTTGCACATTTCAAGTTCTCTTTAATTAATCTGGCCAACGGAAAAATGACTAAAATAAAGGAGACTACAAAAATGTTCAATGCAACAGAAATTGCTTGGGGTTTTCCAAAATTCATACCCTTAGATGAACTTTGTGACTCTAGCAGTGGGTTTATTGTGAATGATACCTGTATAATTGAAGTTCAGATTTTGGTTAGCAAGTCAGAACAGGATAATCAAGTAAACCAACAAATTAACAAGATTGATAATAATCATGATATTGATAAGCCTATTAAACACACGGACAATTTCTTACCCAAGGAAACGCTCACAACCTCATTTGGTGAGCTAGTCGATTTTCGGGGTTTAGGGAAAATAGAGCAAGTTTTTGTTCCATTGTTAGAAGAAGTATGTTCTCGACATCCCTCACTCATTGACAGTCAGCAGAAAAGAAGTGGCAGGTTTGTTGAATGGGCATTCACAGCTTTGGGTCGAGTTCTACATTTTCTCAAGACTAAAAAGGTGAAAGATATGAATGGTGATGCTTGCAATCATCTTCAAATTTTATGGGAGGAGCTGAAGATGTTTAGATTTGATTTGACTTGGCTGGAACCTCATGTTCAATCTGCCTTGGGTATGAAAACTTGTATTGAAAGATCTGTTCAGATGAAAAGGATGGGGGAGGATGTGACTGCTTTAGAGATGGAAACAAAGAGGTTGAAGGCAAAGATGATTGAAGCAGAGGTAAACCTTGAAATAGCAAGAAGAAACTTAATGAAAGAAAAAGAAGGCTTTGAAGAGTGTGATTTGGATGCTGAACTGGGATATGGACGACCATAA

Predicted protein sequences of Glyma18g08540

Limit To All Plant Sequences

>Glyma18g08540.1   sequence type=predicted peptide   gene model=Glyma18g08540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKNKNGKLKFEKFTWRIQNFSKLDCKKLCSDKFLLDHHTWRILVYPKGADVGYLSIYLDAGVVNLPFGWSKFAHFKFSLINLANGKMTKIKETTKMFNATEIAWGFPKFIPLDELCDSSSGFIVNDTCIIEVQILVSKSEQDNQVNQQINKIDNNHDIDKPIKHTDNFLPKETLTTSFGELVDFRGLGKIEQVFVPLLEEVCSRHPSLIDSQQKRSGRFVEWAFTALGRVLHFLKTKKVKDMNGDACNHLQILWEELKMFRFDLTWLEPHVQSALGMKTCIERSVQMKRMGEDVTALEMETKRLKAKMIEAEVNLEIARRNLMKEKEGFEECDLDAELGYGRP*

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