Glyma18g08350 - SoyBase

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Report for Sequence Feature Glyma18g08350

Feature Type:	gene_model
Chromosome:	Gm18
Start:	7105905
stop:	7110971
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g08350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G55840	AT	Annotation by Michelle Graham. TAIR10: Sec14p-like phosphatidylinositol transfer family protein \| chr1:20873891-20876018 FORWARD LENGTH=325	SoyBase	E_val: 4.00E-164	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
KOG1471	KOG	Phosphatidylinositol transfer protein SEC14 and related proteins	JGI		ISS
PTHR23324	Panther	SEC14 RELATED PROTEIN	JGI		ISS
PTHR23324:SF18	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00650	PFAM	CRAL/TRIO domain	JGI		ISS
PF03765	PFAM	CRAL/TRIO, N-terminus	JGI		ISS
UniRef100_O48939	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Polyphosphoinositide binding protein Ssh1p n=1 Tax=Glycine max RepID=O48939_SOYBN	SoyBase	E_val: 3.00E-172	ISS
UniRef100_UPI000233F53A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F53A related cluster n=1 Tax=unknown RepID=UPI000233F53A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g08350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g08350

Paralog	Evidence	Comments
Glyma08g44470	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g08350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g075200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g08350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g08350

Limit To All Plant Sequences

>Glyma18g08350.1   sequence type=CDS   gene model=Glyma18g08350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGGGTGGAAATCAAGAGGCAGTCAAGCAGCTGCAGACCCTGATGGAAAATGTGGATGATGAGCAGCTGAAGAATACATTCCAGATTATGCACCAGGGTTATCAAACGGAAACGTTAATACGGTTTCTCAAAGCTAGGGACTGGAGTGTTGCCAAAGCCCATAAAATGTTAATTGATTGTTTGAACTGGAGGGTGGAAAATGAGATTGACAATGTTTTAAGGAAGCCTATCCCTACGGATTTGTACAAAGCCATACGGGATTCTCAACTTATAGGAATGTCTGGTTACTCAAAGGAGGATCTACCTGTCATTGCTGTTGGTGTTGGGCTCAGTACATATGATAAAGCATCTGACAAATACTATATACAATCACACATCCAACTGAATGAATATAGGGATCGAGTGATCTTGCCAACAGCTACAAGGAAACATGGACGATACATTGGCACCTGTGTTAAAGTGTTGGATATGTCTGGTTTAAAATTTTCTGCATTGAATCAATTGAGGTTGTTGACTGCTATATCTACAATAGATGACTTGAACTATCCGGAAAAGACAGACACATACTATATTGTTAATGCACCATATGTATTCTCAGCGTGTTGGAAGGTTGTGAAGCCTCTTTTGCAAGAAAGAACCAGGAGAAAAATCCAGGTGCTGCAAGGTTGTGGGAAGGAGGAATTACTAAGGGTCATGGACTATGCATCCCTTCCACACTTCTGCAGAAAAGAAGATTCCAAGTCATCCAAACATCATGCTTCAGGAAACTCTGAAAATTGTTTCTCCTTCAATCATGCCTTCCATCAACAACTCTACAATCACATCAAGCAACAAGCCATCATTATGGAGTCAATTTCACCAATCAGACAAGGGTCCTTCTGTGTAGACATACCAGAGCCAGACCCTGATGATGCCAAAATAGCCAAGACCATAGAAAATGAGTTCCACAAATTGGAGAATCAGAAGAATGGTTTTACCAACTCACTAACTGGTCTTTTACAGTTAATGGCCATTGAAAGCTATGCTACTAAAGCTAGTAACTGTTTTTGGCCTCTCCTGAGCCACTTTTATTTGTTGATTACTTTATGGTCCCTTTTGGAAAAGGAGGGTTATACTTGTAGGTCATACTTATACCCGGTTATTAGATCTAATATTGTAATGTTTGCATCAACTAGATGCAAAATTCTTCAGGCAGACCTTAATCTAATTTCTACAACCACCTTGAGATGA

Predicted protein sequences of Glyma18g08350

Limit To All Plant Sequences

>Glyma18g08350.1   sequence type=predicted peptide   gene model=Glyma18g08350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGGNQEAVKQLQTLMENVDDEQLKNTFQIMHQGYQTETLIRFLKARDWSVAKAHKMLIDCLNWRVENEIDNVLRKPIPTDLYKAIRDSQLIGMSGYSKEDLPVIAVGVGLSTYDKASDKYYIQSHIQLNEYRDRVILPTATRKHGRYIGTCVKVLDMSGLKFSALNQLRLLTAISTIDDLNYPEKTDTYYIVNAPYVFSACWKVVKPLLQERTRRKIQVLQGCGKEELLRVMDYASLPHFCRKEDSKSSKHHASGNSENCFSFNHAFHQQLYNHIKQQAIIMESISPIRQGSFCVDIPEPDPDDAKIAKTIENEFHKLENQKNGFTNSLTGLLQLMAIESYATKASNCFWPLLSHFYLLITLWSLLEKEGYTCRSYLYPVIRSNIVMFASTRCKILQADLNLISTTTLR*

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