Glyma18g08290 - SoyBase

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Report for Sequence Feature Glyma18g08290

Feature Type:	gene_model
Chromosome:	Gm18
Start:	7065312
stop:	7069529
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g08290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G13220	AT	Annotation by Michelle Graham. TAIR10: ABC-2 type transporter family protein \| chr3:4247968-4250703 REVERSE LENGTH=685	SoyBase	E_val: 0	ISS
GO:0009555	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen development	SoyBase	N/A	ISS
GO:0010152	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen maturation	SoyBase	N/A	ISS
GO:0010584	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen exine formation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
GO:0042626	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances	SoyBase	N/A	ISS
KOG0061	KOG	Transporter, ABC superfamily (Breast cancer resistance protein)	JGI		ISS
PTHR19241	Panther	ATP-BINDING CASSETTE TRANSPORTER	JGI		ISS
PTHR19241:SF23	Panther	STEROLIN-2 RELATED	JGI		ISS
PF00005	PFAM	ABC transporter	JGI		ISS
PF01061	PFAM	ABC-2 type transporter	JGI		ISS
UniRef100_G7KEK6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ABC transporter G family member n=1 Tax=Medicago truncatula RepID=G7KEK6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N085	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N085_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g08290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g08290

Paralog	Evidence	Comments
Glyma08g44510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g08290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g074800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g08290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g08290

Limit To All Plant Sequences

>Glyma18g08290.1   sequence type=CDS   gene model=Glyma18g08290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAATTGGGAAAGAGGATGAGATTATGGACATGTCAATGTCACCCCCATTAGTTGGTTCCACTAACAATGACACTTGTCACAACAAAGACATCATGTCTCAGGCATATCTTCAAAATAAGTACTCAGAGATTGACATAAAAATTGAAGGTTCCAATATGGAACAAAATCGCCCCCTCCCCATATTTCTCAAGTTTGAAAATGTGGAGTATAAGGTGAGAAATAGAAAAGCAGGCTCTAGTAACCTTGTGAAAACAATGGTGTCAAAGGTATCCACACAACTCACTGTGGAAGAAGATAGATATAAGAAAATTTTGAAGGGCATCACAGGAAGCATAGGCCCCGGTGAAATTCTTGCTCTGATGGGTCCTTCTGGCAGTGGGAAGACAACCTTGTTGAGAGTCATAGGAGGAAGAATAGTTGACAATGTAAAGGGAAAAGTAACATACAATGATGTTCGTTTTACTACAGCTGTCAAGAGGAGGATTGGATTTGTGACACAAGAGGATGTGCTTTACCCACAATTAACTGTTGAAGAAACTTTAGTCTTCTCTGCACTCTTGAGGCTGCCAACCAATATGAGCAAGCAGCAAAAATATGCAAAAGTGAATACAACTATCAAGGAGCTAGGCCTTGAAAGATGCCGCCACACAAAAATAGTTGGAGGATATCTCAAAGGCATATCAGGAGGAGAAAGGAAGAGAACCTGCATAGGCTATGAAATTCTTGTTGATCCTTCACTGTTGCTACTTGATGAACCAACTTCTGGCCTTGATTCCACCGCAGCAAACAAACTCCTTCTCACACTTCAAGGACTTGCTAAGGCTGGAAGGACTATAATTACAACAATACATCAGCCATCCAGCAGAATCTTTCACATGTTCGACAAACTTCTTCTAATATCAGAAGGCTATCCTGTTTACTATGGAAAGGCTAAGGACACAATGGAGTACTTTTCATCCTTGAGATTCACCCCACAAATTCCAATGAATCCTGCAGAGTTCTTGCTTGACTTGGCAACTGGACAAGTGAATGACATAAGTGTTCCAACTGATATCTTGCAAGATCAAGAATCTTCTGACCCTTCAAAAGTTGTTATTGAATATCTACAACTCAAATACAAAACTCTACTGGAACCAAAAGAAAAAGAAGAGAACCATAGAGGAGCAAACACACCAAAACATCTTCAACAAGCCATTCAGGTTAAGAAGGAGTGGACATTGAGTTGGTTGGACCAATTTGATATTCTTTCCAGGAGAACATTCAAAATACGATGCAAGGACTATTTTGATAAGCTAAGACTAGTTCAAGCACTTGGTATTGCACTTTTGTTAGGGCTCCTTTGGTGGAAATCTTCAACCAACACTGAAGCTCAACTCAGAGATCAGGTTGGTTTGGCTTTCTACATCTGTATATTCTGGACATCTTCAAGTATTTTTGGAGCAGTCTATGTCTTTCCATTTGAGAAGTACTACTTGATAAAAGAAAGGAAAGCTGACATGTATAGACTAAGTGTATACTATGCATGTAGCACTATATGTGACATGGTGGCACATGTTTTGTATCCTACATTTTTCATGGTCATCTTGTACTTCATGGCTGGCTTTAAGAGGACTGTTGCTTGCTTCTTCCTGACACTATTCAGTATTCTGTTAATTGCCATAACAAGTCAAGGGGCAGGAGAACTATTTGGAGCTGCAATTATGAGTGTTCAAAGAGCAGGGACAGCTGCTTCTTTAATACTAATGTTATTCCTTCTCACAGGTGGCTACTATGTCCAGCACATACCAAAGTTCATGAAGTGGTTGAAGTATTTGTCCTTCATGTACTATGGCTTCAGGCTTCTTCTAAAAGTGCAGTATTCAGGTGACCAATTATATGATTGTGAAAGCAAGGGAGGGTGCAGGACCCTGCAGAGTTCACCTACATTTGGCATTGTAAACTTGAAAGGTGGATTAAAAGAAGTGTGGATTCTGCTAGCTATGGCCTTAGTCTTTCGATTGTTAGCTTACTTGTGCCTTCGTAGAAGAATTGATCATTCCAACTAA

Predicted protein sequences of Glyma18g08290

Limit To All Plant Sequences

>Glyma18g08290.1   sequence type=predicted peptide   gene model=Glyma18g08290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEIGKEDEIMDMSMSPPLVGSTNNDTCHNKDIMSQAYLQNKYSEIDIKIEGSNMEQNRPLPIFLKFENVEYKVRNRKAGSSNLVKTMVSKVSTQLTVEEDRYKKILKGITGSIGPGEILALMGPSGSGKTTLLRVIGGRIVDNVKGKVTYNDVRFTTAVKRRIGFVTQEDVLYPQLTVEETLVFSALLRLPTNMSKQQKYAKVNTTIKELGLERCRHTKIVGGYLKGISGGERKRTCIGYEILVDPSLLLLDEPTSGLDSTAANKLLLTLQGLAKAGRTIITTIHQPSSRIFHMFDKLLLISEGYPVYYGKAKDTMEYFSSLRFTPQIPMNPAEFLLDLATGQVNDISVPTDILQDQESSDPSKVVIEYLQLKYKTLLEPKEKEENHRGANTPKHLQQAIQVKKEWTLSWLDQFDILSRRTFKIRCKDYFDKLRLVQALGIALLLGLLWWKSSTNTEAQLRDQVGLAFYICIFWTSSSIFGAVYVFPFEKYYLIKERKADMYRLSVYYACSTICDMVAHVLYPTFFMVILYFMAGFKRTVACFFLTLFSILLIAITSQGAGELFGAAIMSVQRAGTAASLILMLFLLTGGYYVQHIPKFMKWLKYLSFMYYGFRLLLKVQYSGDQLYDCESKGGCRTLQSSPTFGIVNLKGGLKEVWILLAMALVFRLLAYLCLRRRIDHSN*

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