Glyma18g08230 - SoyBase

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Report for Sequence Feature Glyma18g08230

Feature Type:	gene_model
Chromosome:	Gm18
Start:	7009892
stop:	7014719
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g08230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G26570	AT	Annotation by Michelle Graham. TAIR10: calcineurin B-like 3 \| chr4:13408608-13409998 REVERSE LENGTH=226	SoyBase	E_val: 2.00E-147	ISS
GO:0005513	GO-bp	Annotation by Michelle Graham. GO Biological Process: detection of calcium ion	SoyBase	N/A	ISS
GO:0010118	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal movement	SoyBase	N/A	ISS
GO:0019722	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium-mediated signaling	SoyBase	N/A	ISS
GO:0055075	GO-bp	Annotation by Michelle Graham. GO Biological Process: potassium ion homeostasis	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009705	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG0034	KOG	Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein	JGI		ISS
PTHR23056	Panther	CALCINEURIN B	JGI		ISS
PTHR23056:SF3	Panther	CALCINEURIN B	JGI		ISS
UniRef100_B0I558	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calcineurin B-like protein n=1 Tax=Phaseolus vulgaris RepID=B0I558_PHAVU	SoyBase	E_val: 5.00E-162	ISS
UniRef100_UPI000189DA91	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000189DA91 related cluster n=1 Tax=unknown RepID=UPI000189DA91	SoyBase	E_val: 2.00E-163	ISS

Expression Patterns of Glyma18g08230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g08230 not represented in the dataset	Glyma18g08230 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g08230

Paralog	Evidence	Comments
Glyma08g44580	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g08230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g074200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g08230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g08230

Limit To All Plant Sequences

>Glyma18g08230.2   sequence type=transcript   gene model=Glyma18g08230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGGGTTATACCATTTGATATAAAAATATGTTGTCAGAGGTTCTTGTGGGTTGTACTCTATCTGTCATCGACCATATCACTTTCGTCACCTTCACAGATACATTCGTTGCAATCATCCATCTCACTTCCACAAATTCCTCCAAATTCTAACCAAACCCTTCACTACTCCAAATTCCAAAACTTCTTCACACTCCTTCTTTTCCCTCTTCTGTTGCCCGATCTTCTGCCTCCAAGATTTTGGTATTTGGGATTGATCACCTGGAGTTGGAAATGGTTAAAAGTTATGGAGTGTTCTGATTTGCAAAAGATATCATGTTGCGGTGCTTAGAGGGACTTAAGCCTTTATTTGCTTCCATATTACGATGTTGTGACCTGGATATATATAACCAGCCAAGAGGCCTTGAAGATCCTGAACTTCTTGCTAGAGAGACTGTGTTCAGTGTAAGCGAAATAGAAGCACTTTACGAGCTCTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGGAAGAGTTTCAGTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTGCTGATCGGGTATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGTTTGCTCGTGCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATTTTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGACAAGAGGTGAAGCAAATGGTAGTTGCTACTCTTGCTGAATCTGGCATGAACCTATCAGATGACGTTATAGAAAGTATAATTGACAAGACCTTCGAGGAAGCAGATACAAAGCATGATGGCAAAATTGACAAGGAAGAGTGGAGAAACCTTGTTTTGCGCCATCCGTCACTTTTGAAGAACATGACCCTTCAATACCTCAAGGACATCACCACAACATTCCCGAGCTTTGTATTTCATTCACAAGTAGACGATACTTGAAGATAATTTCTCCCATGGCTTCTTCCTTTGGGCTGCATGGCCACTTTTGTACAAAAAAGGGCATGGCAGACAGCCTTGCTTTTACCTTACATTTGTTATATCTTTGAATAATGTATTTTGTTTTGTGGATTCTTTTGCTGGGATTTTACTTTCATTTTTTCTTCAAACTTCTAGACACATTTGGTTCCCATTTTTCAAATTTCAAAAGCAAGATTCCAAGGTTGTGTAGAGTTTGTTTTAAATTATGAGTATGTCATGACCTCAGAATATTTTGAAATTCTTTATGGTCAAAACTTGTCTACCGCATGTAAATAACTTCTTTGCCTTTGTTTCAATATGATTGTAGTCCTTAAAATAGGGGAGAGTTTACTTTTTTAATTTTTAAAAGTAAATCATTTCCTTAAACAATAAATGTGTAGTGTGTTTTGTATTCCAAAAAACTGAAGGT

>Glyma18g08230.3   sequence type=transcript   gene model=Glyma18g08230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGGGTTATACCATTTGATATAAAAATATGTTGTCAGAGGTTCTTGTGGGTTGTACTCTATCTGTCATCGACCATATCACTTTCGTCACCTTCACAGATACATTCGTTGCAATCATCCATCTCACTTCCACAAATTCCTCCAAATTCTAACCAAACCCTTCACTACTCCAAATTCCAAAACTTCTTCACACTCCTTCTTTTCCCTCTTCTGTTGCCCGATCTTCTGCCTCCAAGTTATGGAGTGTTCTGATTTGCAAAAGATATCATGTTGCGGTGCTTAGAGGGACTTAAGCCTTTATTTGCTTCCATATTACGATGTTGTGACCTGGATATATATAACCAGCCAAGAGGCCTTGAAGATCCTGAACTTCTTGCTAGAGAGACTGTGTTCAGTGTAAGCGAAATAGAAGCACTTTACGAGCTCTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGGAAGAGTTTCAGTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTGCTGATCGGGTATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGTTTGCTCGTGCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATTTTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGACAAGAGGTGAAGCAAATGGTAGTTGCTACTCTTGCTGAATCTGGCATGAACCTATCAGATGACGTTATAGAAAGTATAATTGACAAGACCTTCGAGGAAGCAGATACAAAGCATGATGGCAAAATTGACAAGGAAGAGTGGAGAAACCTTGTTTTGCGCCATCCGTCACTTTTGAAGAACATGACCCTTCAATACCTCAAGGACATCACCACAACATTCCCGAGCTTTGTATTTCATTCACAAGTAGACGATACTTGAAGATAATTTCTCCCATGGCTTCTTCCTTTGGGCTGCATGGCCACTTTTGTACAAAAAAGGGCATGGCAGACAGCCTTGCTTTTACCTTACATTTGTTATATCTTTGAATAATGTATTTTGTTTTGTGGATTCTTTTGCTGGGATTTTACTTTCATTTTTTCTTCAAACTTCTAGACACATTTGGTTCCCATTTTTCAAATTTCAAAAGCAAGATTCCAAGGTTGTGTAGAGTTTGTTTTAAATTATGAGTATGTCATGACCTCAGAATATTTTGAAATTCTTTATGGTCAAAACTTGTCTACCGCATGTAAATAACTTCTTTGCCTTTGTTTCAATATGATTGTAGTCCTTAAAATAGGGGAGAGTTTACTTTTTTAATTTTTAAAAGTAAATCATTTCCTTAAACAATAAATGTGTAGTGTGTTTTGTATTCCAAAAAACTGAAGGT

Coding sequences of Glyma18g08230

Limit To All Plant Sequences

>Glyma18g08230.1   sequence type=CDS   gene model=Glyma18g08230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCGGTGCTTAGAGGGACTTAAGCCTTTATTTGCTTCCATATTACGATGTTGTGACCTGGATATATATAACCAGCCAAGAGGCCTTGAAGATCCTGAACTTCTTGCTAGAGAGACTGTGTTCAGTGTAAGCGAAATAGAAGCACTTTACGAGCTCTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGGAAGAGTTTCAGTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTGCTGATCGGGTATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGTTTGCTCGTGCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATTTTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGACAAGAGGTGAAGCAAATGGTAGTTGCTACTCTTGCTGAATCTGGCATGAACCTATCAGATGACGTTATAGAAAGTATAATTGACAAGACCTTCGAGGAAGCAGATACAAAGCATGATGGCAAAATTGACAAGGAAGAGTGGAGAAACCTTGTTTTGCGCCATCCGTCACTTTTGAAGAACATGACCCTTCAATACCTCAAGGACATCACCACAACATTCCCGAGCTTTGTATTTCATTCACAAGTAGACGATACTTGA

>Glyma18g08230.2   sequence type=CDS   gene model=Glyma18g08230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCGGTGCTTAGAGGGACTTAAGCCTTTATTTGCTTCCATATTACGATGTTGTGACCTGGATATATATAACCAGCCAAGAGGCCTTGAAGATCCTGAACTTCTTGCTAGAGAGACTGTGTTCAGTGTAAGCGAAATAGAAGCACTTTACGAGCTCTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGGAAGAGTTTCAGTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTGCTGATCGGGTATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGTTTGCTCGTGCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATTTTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGACAAGAGGTGAAGCAAATGGTAGTTGCTACTCTTGCTGAATCTGGCATGAACCTATCAGATGACGTTATAGAAAGTATAATTGACAAGACCTTCGAGGAAGCAGATACAAAGCATGATGGCAAAATTGACAAGGAAGAGTGGAGAAACCTTGTTTTGCGCCATCCGTCACTTTTGAAGAACATGACCCTTCAATACCTCAAGGACATCACCACAACATTCCCGAGCTTTGTATTTCATTCACAAGTAGACGATACTTGA

>Glyma18g08230.3   sequence type=CDS   gene model=Glyma18g08230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCGGTGCTTAGAGGGACTTAAGCCTTTATTTGCTTCCATATTACGATGTTGTGACCTGGATATATATAACCAGCCAAGAGGCCTTGAAGATCCTGAACTTCTTGCTAGAGAGACTGTGTTCAGTGTAAGCGAAATAGAAGCACTTTACGAGCTCTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGGAAGAGTTTCAGTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTGCTGATCGGGTATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGTTTGCTCGTGCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATTTTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGACAAGAGGTGAAGCAAATGGTAGTTGCTACTCTTGCTGAATCTGGCATGAACCTATCAGATGACGTTATAGAAAGTATAATTGACAAGACCTTCGAGGAAGCAGATACAAAGCATGATGGCAAAATTGACAAGGAAGAGTGGAGAAACCTTGTTTTGCGCCATCCGTCACTTTTGAAGAACATGACCCTTCAATACCTCAAGGACATCACCACAACATTCCCGAGCTTTGTATTTCATTCACAAGTAGACGATACTTGA

Predicted protein sequences of Glyma18g08230

Limit To All Plant Sequences

>Glyma18g08230.1   sequence type=predicted peptide   gene model=Glyma18g08230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLRCLEGLKPLFASILRCCDLDIYNQPRGLEDPELLARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTLQYLKDITTTFPSFVFHSQVDDT*

>Glyma18g08230.2   sequence type=predicted peptide   gene model=Glyma18g08230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLRCLEGLKPLFASILRCCDLDIYNQPRGLEDPELLARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTLQYLKDITTTFPSFVFHSQVDDT*

>Glyma18g08230.3   sequence type=predicted peptide   gene model=Glyma18g08230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLRCLEGLKPLFASILRCCDLDIYNQPRGLEDPELLARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTLQYLKDITTTFPSFVFHSQVDDT*

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