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Report for Sequence Feature Glyma18g08220

Feature Type:gene_model
Chromosome:Gm18
Start:7005667
stop:7008880
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g08220
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G56000AT Annotation by Michelle Graham. TAIR10: HEAT SHOCK PROTEIN 81.4 | chr5:22677602-22680067 REVERSE LENGTH=699 SoyBaseE_val: 0ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0051082GO-mf Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding SoyBaseN/AISS
KOG0019 KOG Molecular chaperone (HSP90 family) JGI ISS
PTHR11528Panther HEAT SHOCK PROTEIN 90 JGI ISS
PF00183PFAM Hsp90 protein JGI ISS
PF02518PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JGI ISS
UniRef100_D6C4Z9UniRef Annotation by Michelle Graham. Most informative UniRef hit: HSP90-1 n=1 Tax=Glycine max RepID=D6C4Z9_SOYBN SoyBaseE_val: 0ISS
UniRef100_D6C4Z9UniRef Annotation by Michelle Graham. Best UniRef hit: HSP90-1 n=1 Tax=Glycine max RepID=D6C4Z9_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g08220
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g08220
ParalogEvidenceComments
Glyma08g44590 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g08220 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g074100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g08220
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g08220
>Glyma18g08220.1   sequence type=CDS   gene model=Glyma18g08220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAGACCGAGACGTTTGCTTTCCAGGCTGAGATCAACCAGCTCCTCAGTCTCATCATCAACACCTTCTACTCCAACAAGGAAATCTTCCTTCGTGAACTCATCAGCAACGCCTCTGATGCTTTGGACAAGATTAGATTTGAGAGTTTGACGGACAAGAGCAAGCTCGATGCTCAGCCAGAGTTGTTCATTCATATTATTCCCGACAAGACTAACAATTCGCTGACCATTGTTGACAGTGGCATTGGCATGACCAAAGCTGATTTGGTAAACAACTTGGGTACAATTGCTAGGTCTGGTACCAAGGAATTCATGGAAGCCTTGGCTGCTGGTGCTGATGTTAGTATGATTGGACAGTTTGGTGTGGGGTTCTACTCTGCATATCTTGTTGCCGAAAAGGTCATTGTTACCTCCAAGCACAATGATGATGAGCAGTACGTTTGGGAGTCCCAAGCTGGAGGTTCATTCACTGTCACCAGGGATACCTCTGGTGAGGTTCTTGGCAGGGGTACTAAGATCACTCTCTTCCTCAAGGAGGATCAGCTAGAGTACCTTGAGGAGCGCCGGTTGAAGGATTTGATTAAGAAGCATTCTGAGTTCATTAGCTACCCAATTTCTCTTTGGGTTGAGAAGACTACCGAGAAGGAGATTTCTGACGATGAGGATGAGGAAGAGAAGAAGGATGAGGAGGGTAAGGTGGAGGATGTTGATGAGGAGAAGGAGAAGGAAGAAAAAAAGAAAAAGAAGATCAAGGAAGTGTCACATGAATGGTCCTTGGTGAACAAGCAGAAGCCCATTTGGATGAGGAAGCCTGAGGAGATCACAAAAGAGGAGTATTCTGCTTTCTACAAGAGTCTTACCAATGACTGGGAAGAGCATTTGGCTGTCAAGCACTTCTCTGTTGAGGGTCAGTTGGAGTTTAAGGCTATACTCTTTGTTCCCAAGAGGGCACCTTTTGACCTCTTTGACACAAGGAAGAAGCCTAACAACATTAAGCTCTATGTCCGCCGTGTCTTTATTATGGACAACTGTGAGGAGTTGATTCCTGAGTATTTGGGCTTTGTCAAGGGTATTGTTGATTCTGAAGATCTCCCACTCAACATTTCAAGAGAAATGTTGCAACAGAACAAGATCTTGAAGGTCATCCGTAAGAACTTGGTCAAGAAGTGCCTTGAGCTCTTCTTTGAAATTGCAGAGAACAAGGAGGATTACAACAAGTTCTATGAGGCTTTCTCTAAGAACTTAAAGCTTGGTATCCATGAGGATTCCCAGAACAAGGGAAAGATTGCTGAATTGCTCAGGTACCACTCCACCAAGAGTGGTGATGAGCTGACAAGCCTCAAGGATTATGTGACCAGGATGAAGGAAGGTCAGAGTGACATCTACTACATCACCGGTGAAAGCAAGAAGGCTGTTGAGAACTCCCCATTCTTGGAGAAGTTGAAGAAGAAAGGGTATGAGGTTCTTTTCATGGTTGATGCCATTGATGAATATGCTGTTGGCCAGCTCAAGGAATTTGAGGGCAAGAAGCTTGTCTCTGCCACCAAGGAGGGTCTCAAACTTGACGAGAGTGAAGATGAGAAGAAGAAGCAAGAGGAGTTGAAGGAGAAGTTTGACAACCTATGCAAGGTGATCAAGGATGTTTTGGGTGACAAGGTTGAGAAGGTTGTAGTCTCTGACCGTGTTGTTGATTCACCATGCTGTCTGGTGACTGGAGAATACGGTTGGACTGCAAACATGGAAAGGATCATGAAAGCTCAAGCCCTAAGGGACAACAGCATGGCAGGATACATGTCAAGCAAGAAGACAATGGAGATCAACCCTGAGAACCCAATCATGGAGGAGCTCAGGAAGCGTGCGGATGCTGACAAGAACGACAAATCCGTGAAGGACCTTGTTCTGTTGCTGTTCGAGACTGCTCTTCTCACTTCTGGTTTCAGCCTTGACGAACCCAACACTTTTGGAAACAGGATCCACAGAATGTTGAAGCTTGGACTGAGCATCGACGAGGATGCAGCTGAAGCTGATGCTGATGCTGATATGCCCCCACTGGAGGAGGAGGCTGAAGCTGATGCTGAGGGCAGCAAAATGGAGGAGGTTGATTAA
Predicted protein sequences of Glyma18g08220
>Glyma18g08220.1   sequence type=predicted peptide   gene model=Glyma18g08220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNASDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTSKHNDDEQYVWESQAGGSFTVTRDTSGEVLGRGTKITLFLKEDQLEYLEERRLKDLIKKHSEFISYPISLWVEKTTEKEISDDEDEEEKKDEEGKVEDVDEEKEKEEKKKKKIKEVSHEWSLVNKQKPIWMRKPEEITKEEYSAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISREMLQQNKILKVIRKNLVKKCLELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNKGKIAELLRYHSTKSGDELTSLKDYVTRMKEGQSDIYYITGESKKAVENSPFLEKLKKKGYEVLFMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKKQEELKEKFDNLCKVIKDVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDLVLLLFETALLTSGFSLDEPNTFGNRIHRMLKLGLSIDEDAAEADADADMPPLEEEAEADAEGSKMEEVD*






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