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Report for Sequence Feature Glyma18g08080

Feature Type:gene_model
Chromosome:Gm18
Start:6828697
stop:6832158
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g08080
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G13230AT Annotation by Michelle Graham. TAIR10: RNA-binding KH domain-containing protein | chr3:4270423-4271070 FORWARD LENGTH=215 SoyBaseE_val: 7.00E-129ISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
KOG3273 KOG Predicted RNA-binding protein Pno1p interacting with Nob1p and involved in 26S proteasome assembly JGI ISS
PTHR12826Panther FAMILY NOT NAMED JGI ISS
PF00013PFAM KH domain JGI ISS
UniRef100_G7IY73UniRef Annotation by Michelle Graham. Most informative UniRef hit: RNA-binding protein pno1 n=1 Tax=Medicago truncatula RepID=G7IY73_MEDTR SoyBaseE_val: 8.00E-136ISS
UniRef100_I1N067UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N067_SOYBN SoyBaseE_val: 2.00E-160ISS

Expression Patterns of Glyma18g08080
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g08080 not represented in the dataset
Glyma18g08080 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g08080 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g072600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g08080
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g08080
>Glyma18g08080.1   sequence type=CDS   gene model=Glyma18g08080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTCAAATCAGGAAGCTTCTTCCATGGAAGTTGAGACTGTCCCATCTGAAGCCAAACTTTTGCCACCAAAGCCAAAGTTTGAGCCTTTGAAGCCTCATGAGATGTCTGATGGTCAGGTACAGTTCCGCAAGGTGAATGTTCCACCTCATCGTTATACCCCTCTCAAGAAAGCTTGGATGGATATCTATAGTCCCATATATGAACAGATGAAAATTGATGTCCGTATGAATTTGAAGGCTCGTAGAGTGGAGCTGAAGACAAGGCCTGATACACCTGATATTAGTAACCTGCAAAAATGTGCTGATTTTGTCCATGCTTTCATGTTGGGTTTTGATGTCATAGATGCCATTGCTCTTCTGCGTTTGGATGAGCTCTACATTGAGTCCTTTGAGATCAAGGATGTTAAAACACTTCGAGGAGATCACTTGTCTCGTGCTATTGGAAGGTTGTCTGGTAAGGGTGGTAAAACAAAGTTTGCAATTGAGAATGCGTCGAAGACAAGAATCGTGATTGCTGACACCAAAATTCACATATTGGGATCTTTTGCCAACATAAAGATTGCCAGAGATTCTCTTTGTAGCCTGATTCTAGGATCACCAGCAGGAAAGGTGTATTCAAAACTAAGGGCAGTTACTGCTAGATTGGCAGAAAGGTTTTGA
Predicted protein sequences of Glyma18g08080
>Glyma18g08080.1   sequence type=predicted peptide   gene model=Glyma18g08080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESNQEASSMEVETVPSEAKLLPPKPKFEPLKPHEMSDGQVQFRKVNVPPHRYTPLKKAWMDIYSPIYEQMKIDVRMNLKARRVELKTRPDTPDISNLQKCADFVHAFMLGFDVIDAIALLRLDELYIESFEIKDVKTLRGDHLSRAIGRLSGKGGKTKFAIENASKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF*






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