Glyma18g08070 - SoyBase

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Report for Sequence Feature Glyma18g08070

Feature Type:	gene_model
Chromosome:	Gm18
Start:	6814825
stop:	6824030
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g08070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G13235	AT	Annotation by Michelle Graham. TAIR10: ubiquitin family protein \| chr3:4271492-4274348 REVERSE LENGTH=413	SoyBase	E_val: 0	ISS
GO:0006486	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein glycosylation	SoyBase	N/A	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004190	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aspartic-type endopeptidase activity	SoyBase	N/A	ISS
KOG0012	KOG	DNA damage inducible protein	JGI		ISS
PTHR12917	Panther	ASPARTYL PROTEASE DDI-RELATED	JGI		ISS
PTHR12917:SF1	Panther	DNA-DAMAGE INDUCIBLE PROTEIN DDI1 (V-SNARE-MASTER 1)	JGI		ISS
PF00240	PFAM	Ubiquitin family	JGI		ISS
PF00627	PFAM	UBA/TS-N domain	JGI		ISS
PF09668	PFAM	Aspartyl protease	JGI		ISS
UniRef100_C6TCW0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TCW0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7IY74	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA damage-inducible protein n=1 Tax=Medicago truncatula RepID=G7IY74_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g08070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g08070

Paralog	Evidence	Comments
Glyma08g44820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g08070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g072500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g08070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g08070

Limit To All Plant Sequences

>Glyma18g08070.2   sequence type=CDS   gene model=Glyma18g08070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAATCACTGTCATGACTGCTGATGAACAAATCATCACGTTAGATGTGGATCCCCACGAATCTGTGGAAAACGTCAAAGCATTGCTCGAGGTTGAGACAAGTGTGCCTCTTCAACAACAGCAGCTTCTGTTTAATGGGAAGGAAGTGAGGAATTCTGAGAAGTTGAGTGCTCTTGGTGTTAAGGATGATGATTTGCTAATGATGGTGTCTGGTGCTGGCGCTGGCGCTACTGCTTCTAGTGGATCTACGAATGATTTGAGCTTAAATGCTGATGGATCTGCTGTCAACCCTGGTTCTTTCCAGCAGCACATTAGACATGATTCTAATTTGATGAGTCAGCTCTTTCAGAGTGATCCAGAGTTGGCACAAGCTATTTTAGGGAATGATCTGAACAAATTGCAGGAAGTTTTACGATTGCGTCATCACCAAAGAGATGAATTAAAGCGTCAGAAGGAAGAAGAGCTTGCTCTTCTTTATGCTGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCCATCCGCCAGAAAGGGATTGATGAAAATTGGGCTGCTGCATTAGAACATAATCCTGAAGCTTTTGCTAGAGTGGTCATGTTGTATGTTGATATGGAGGTTAATGGTGTCCCATTGAAGGCATTTGTGGATAGTGGAGCTCAGTCTACCATTATATCAAAAAGCTGTGCTGAGCGTCTTGGATTGTTGAGACTTTTAGATCAGCGTTACAGAGGAATTGCTCATGGAGTTGGCCAATCAGAAATATTGGGTCGTATACATGTAGCTCCAATCAAGATTGGGAGTATATTTTACCCCTGCTCATTCTTGGTGCTGGATTCTCCCAATATGGAGTTTCTCTTTGGACTGGATATGCTCCGAAAGCACCAGTGTATAATTGATTTGAAAGAAAATGTTTTGCGAGTTGGTGGAGGAGAAGTTTCTGTACCATTTTTGCAAGAGAAAGACATACCATCTCGGTTTCTAGACGAGGAAAAGTATGCTAAGGAAGCTTCAGGCTCTGGTGGTCAAGTTGCATCAGGCAGCAATAATCCATCAACAGGAGGCCACTCTTCTGGTGGAGCTTCTGGTGACAGGACTAAGGATTCTGAGTTTGAAGCCAAAGTTGCAAAGCTTGTTGAATTGGGATTTGAAAGAAATGCAATTATACAAGCTCTTCAATTATTCAATGGCAATGAGGAACAGGCAGCTGGGTTTCTTTTTGGGGGCTAG

Predicted protein sequences of Glyma18g08070

Limit To All Plant Sequences

>Glyma18g08070.2   sequence type=predicted peptide   gene model=Glyma18g08070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKITVMTADEQIITLDVDPHESVENVKALLEVETSVPLQQQQLLFNGKEVRNSEKLSALGVKDDDLLMMVSGAGAGATASSGSTNDLSLNADGSAVNPGSFQQHIRHDSNLMSQLFQSDPELAQAILGNDLNKLQEVLRLRHHQRDELKRQKEEELALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERLGLLRLLDQRYRGIAHGVGQSEILGRIHVAPIKIGSIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGGGEVSVPFLQEKDIPSRFLDEEKYAKEASGSGGQVASGSNNPSTGGHSSGGASGDRTKDSEFEAKVAKLVELGFERNAIIQALQLFNGNEEQAAGFLFGG*

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