SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G23810 | AT | Annotation by Michelle Graham. TAIR10: amino acid permease 7 | chr5:8028461-8030730 FORWARD LENGTH=467 | SoyBase | E_val: 0 | ISS |
| GO:0006865 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0015171 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: amino acid transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG1303 | KOG | Amino acid transporters | JGI | ISS | |
| PTHR22950 | Panther | AMINO ACID TRANSPORTER | JGI | ISS | |
| PF01490 | PFAM | Transmembrane amino acid transporter protein | JGI | ISS | |
| UniRef100_G7IY94 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Amino acid permease n=1 Tax=Medicago truncatula RepID=G7IY94_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00017066A4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00017066A4 related cluster n=1 Tax=unknown RepID=UPI00017066A4 | SoyBase | E_val: 0 | ISS |
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Glyma18g08000 not represented in the dataset |
Glyma18g08000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g44930 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g071900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g08000.1 sequence type=CDS gene model=Glyma18g08000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATGGGAAAAAATCTCTACAAATAACTAGAAGTGGTACTGGTGCTTATGATGATGATGGACATGCCAAAAGGACTGGGAATTTGCAGAGTGCTGTAGCTCATATCATTACTGCTGTTATTGGTTCTGGTGTTCTCTCTCTTGCATGGAGCACTTCTCAGTTAGGATGGATTGGAGGGCCAGTTGCATTGCTTTGTTGTGCAATTGTTACCTATATTTCTTCATTCCTCCTGTCTGATTGCTACAGAACTCCTGATCCTGTCACTGGGAAAAGAAACTACTCTTACATGGATGCTGTTAGAGTTTATCTTGGTTATAAAAGGACATGTGTAGCTGGCTTCCTTCAATTTTTGACTTTGTATGGTACTAGTATTGCTTATGTACTAACCACAGCAACTAGTCTGAGTGCAATTCTGAGATCAAATTGTTATCACAAGAAAGGGCATGAAGCTCCTTGTAAATATGGTGGCAATCTGTATATGGCACTGTTTGGACTTGTTCAGATTGTAATGTCATTCATACCGGATCTCCATAACATGGCATGGGTTTCAGTTGTTGCAGCACTTATGTCCTTTACATACTCATTCATTGGACTAGGACTTGGCATAGCAACGGTCATAAAAAATGGAAGAATTATGGGAAGCTTGACAGGAATACCAACTGATAAAATTGCTGACAAATTTTGGTTAGTCTTCCAAGCACTTGGTGACATTGCCTTTGCCTATCCATACTCCATTCTCCTTCTTGAGATCCAGGACACTCTAGAGTCTCCTCCACCAGAAAATCAAACCATGAAAAAGGCCTCCATGGTTGCAATCTTCATTACAACATTCTTCTACCTGTGCTGTGGATGCTTTGGATATGCAGCTTTTGGAAATGATACACCAGGAAACCTCTTGACAGGGTTTGGCTTTTTTGAGCCTTTCTGGCTCATTGACCTTGCTAATGCTTGCATCATTCTTCACTTGGTGGGAGGATATCAGATTTACAGTCAACCAATATACAGTACTGTTGATAGATGGGCTTCAAGAAAATTCCCCAACAGTGGCTTTGTGAATAATTTCTACAAAGTGAAACTGCCTTTGCTTCCAGGTTTTCAGCTAAATCTTTTCAGGTTCTGTTTTAGAACAACCTATGTGATCTCAACCACTGGTCTTGCAATCTTTTTTCCTTACTTCAACCAAATCCTAGGAGTGTTAGGAGCCATAAACTTCTGGCCATTGGCTATATACTTCCCAGTAGAGATGTACTTTGTACAGAACAAAATTGCAGCTTGGAGTAGCAAATGGATTGTTCTTAGAACATTCAGCTTTGCTTGCTTTCTTGTCACTGGAATGGGCTTGGTTGGCTCACTTGAAGGAATAGTAAGTGCCAAATTAAAGTAG
>Glyma18g08000.1 sequence type=predicted peptide gene model=Glyma18g08000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDGKKSLQITRSGTGAYDDDGHAKRTGNLQSAVAHIITAVIGSGVLSLAWSTSQLGWIGGPVALLCCAIVTYISSFLLSDCYRTPDPVTGKRNYSYMDAVRVYLGYKRTCVAGFLQFLTLYGTSIAYVLTTATSLSAILRSNCYHKKGHEAPCKYGGNLYMALFGLVQIVMSFIPDLHNMAWVSVVAALMSFTYSFIGLGLGIATVIKNGRIMGSLTGIPTDKIADKFWLVFQALGDIAFAYPYSILLLEIQDTLESPPPENQTMKKASMVAIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFFEPFWLIDLANACIILHLVGGYQIYSQPIYSTVDRWASRKFPNSGFVNNFYKVKLPLLPGFQLNLFRFCFRTTYVISTTGLAIFFPYFNQILGVLGAINFWPLAIYFPVEMYFVQNKIAAWSSKWIVLRTFSFACFLVTGMGLVGSLEGIVSAKLK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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