Glyma18g07920 - SoyBase

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Report for Sequence Feature Glyma18g07920

Feature Type:	gene_model
Chromosome:	Gm18
Start:	6662462
stop:	6667027
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g07920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G56130	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr5:22722755-22725065 REVERSE LENGTH=315	SoyBase	E_val: 0	ISS
GO:0010267	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference	SoyBase	N/A	ISS
GO:0031047	GO-bp	Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0080008	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
KOG1407	KOG	WD40 repeat protein	JGI		ISS
PTHR22839	Panther	THO COMPLEX SUBUNIT 3 (THO3)	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_G7IY98	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: THO complex subunit n=1 Tax=Medicago truncatula RepID=G7IY98_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N056	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1N056_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g07920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g07920

Paralog	Evidence	Comments
Glyma08g45000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g07920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g071300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g07920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g07920

Limit To All Plant Sequences

>Glyma18g07920.1   sequence type=CDS   gene model=Glyma18g07920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAACAAATCCCATTTAAGAATCTCCATAACAGAGAGTATTCGGGTCACAAGAAGAAGGTGCACTCCGTGGCTTGGAATTGCATTGGCACAAAACTTGCTTCTGGTTCTGTGGATCAAACTGCGCGAATATGGCATATTGAGCCACATGGGCATGGCAAGGTCAAAGATATTGAATTGAAAGGTCACACTGATAGTGTCGATCAGCTATGCTGGGACCCCAAACATGCTGATTTGATTGCAACTGCATCGGGTGACAAGACTGTTCGTTTGTGGGATGCTCGAAGTGGAAAATGCTCTCAACAGGCAGAACTTAGTGGAGAGAATATCAACATCACTTACAAACCTGATGGGACTCATGTAGCTGTTGGTAACAGGGATGATGAATTAACAATATTGGATGTTCGGAAGTTCAAACCAATTCATAGGCGCAAGTTCAATTATGAGGTAAATGAGATTGCTTGGAACATGACGGGTGAGATGTTCTTTCTAACAACAGGAAATGGGACTGTGGAAGTACTTTCTTACCCATCTCTTCGACCTCTTGACACTCTCATGGCTCATACAGCTGGTTGTTATTGCATCGCAATTGATCCAGTAGGAAGATATTTTGCTGTTGGAAGTGCTGATTCCCTTGTCAGTCTGTGGGATATCTCAGAGATGCTCTGCGTGCGTACCTTCACAAAGCTAGAATGGCCTGTCCGGACAATTGGCTTCAATTACACTGGAGATTTTATTGCTTCTGCAAGTGAAGACTTGTTCATTGATATTTCAAATGTTCATACTGGAAGAACAGTGCATCAAATTCCTTGTAGGGCTGCTATGAACAGTGTTGAGTGGAATCCTAAATACAATTTACTTGCATATGCTGGTGATGACAAAAACAAGCATCAGGCTGATGAAGGTGTTTTTCGCATTTTTGGTTTTAAAAATGCTTAG

Predicted protein sequences of Glyma18g07920

Limit To All Plant Sequences

>Glyma18g07920.1   sequence type=predicted peptide   gene model=Glyma18g07920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEQIPFKNLHNREYSGHKKKVHSVAWNCIGTKLASGSVDQTARIWHIEPHGHGKVKDIELKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHRRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLSYPSLRPLDTLMAHTAGCYCIAIDPVGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIGFNYTGDFIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKHQADEGVFRIFGFKNA*

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