Glyma18g07900 - SoyBase

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Report for Sequence Feature Glyma18g07900

Feature Type:	gene_model
Chromosome:	Gm18
Start:	6642314
stop:	6646565
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g07900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G20920	AT	Annotation by Michelle Graham. TAIR10: translocation protein-related \| chr3:7328763-7330698 REVERSE LENGTH=365	SoyBase	E_val: 4.00E-179	ISS
GO:0015031	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0008565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein transporter activity	SoyBase	N/A	ISS
KOG2927	KOG	Membrane component of ER protein translocation complex	JGI		ISS
PTHR12443	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR12443:SF1	Panther	gb def: drosophila translocation protein 1 like [caenorhabditis elegans]	JGI		ISS
PF03839	PFAM	Translocation protein Sec62	JGI		ISS
UniRef100_G7IYA2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Translocation protein sec62 n=1 Tax=Medicago truncatula RepID=G7IYA2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N055	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N055_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g07900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g07900

Paralog	Evidence	Comments
Glyma08g45020	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g07900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g071100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g07900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g07900

Limit To All Plant Sequences

>Glyma18g07900.1   sequence type=CDS   gene model=Glyma18g07900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAGTCTTCGGGAAGCGCAGCTGACAAGAAGAGGGTGCGACGGTCCTCCGCCCTAGATCCCACCTCCGACGCCCCTCCAAGGAAACAAGCTGTCAAGAAAGATGTGTTCCGGGTGTTTGCTGAGAAGGTTAGAGACCATAAAGAATTGGTTTCAAGATGGGCTGTTCTACAGGAGACGCGTGTTGAGTATTTTAGAGGGAAGGATTTCGTGAGCTTCTTAAAAAGCCATCCGGAGCTCAAAGATGTTCTAGAATTAGATAGGATTTTGGAAACAGAGGAGATTGCCAACATTCTACTTGCAAAAAATCTTTTAGTGCGCTGTGATCGTGTTGTAAAAACTGTTCGTCCTGGGAAGAAAAAGCTGTCTACCTGGCCTGCACATTTAGAAATTTTCCCTGAACAAGTATTTTCTGAAAATGATGCTTTTTTTGCATGGACGTTTGTAAAACGCCATCCACTCTGGCAGACACTCCTCTCATTCTTCTGGCCTGTGTTAACGTTGGCTATTTGCTTATTTCCTGTGTACCCTCATCGCTGCAAGCTATTGATACTTTACTCATGTGCTGGGATCCTTTTCCTCATTCTCTCTCTACTTTTGATAAGAGGTACAATATTTGGTGCTTTATATATTGTACTTGGAAAGCGAATCTGGTTTTTCCCCAACATCCTTGCCGAGGAAGCAACTCTGCGGGAGTTGTTCAGATTTTGGCCTAAGAAAGATGAAGAGGAAAAGCCGAAGTGGACAACAAGGATTTTCTATGCTGGAGTAGCTGTGCTGTTCATATTACTGCTGAGGCATCATGCACCCGATGAAGCTGCCAGAGCAAGGTACCAGAAGAGGGTATCTAACATCATTGATGATGTTCTTGAATGGTCTCCGACTTTAGCCTTGTCTGGGAGGATGGAAAAGCAACAAAATGTGGCTAATGCCACAGGGTCCGCCGATGCAAGCAAAAACGGACCGGAGGATGCAGTTCCAGCTGACGGCGATGATGCAAAAGCTTTTGTGGAACAATATAATAATACTGAAGTCATAGAGGATGTGGATGATGATAAACAGCATGATTAA

Predicted protein sequences of Glyma18g07900

Limit To All Plant Sequences

>Glyma18g07900.1   sequence type=predicted peptide   gene model=Glyma18g07900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKSSGSAADKKRVRRSSALDPTSDAPPRKQAVKKDVFRVFAEKVRDHKELVSRWAVLQETRVEYFRGKDFVSFLKSHPELKDVLELDRILETEEIANILLAKNLLVRCDRVVKTVRPGKKKLSTWPAHLEIFPEQVFSENDAFFAWTFVKRHPLWQTLLSFFWPVLTLAICLFPVYPHRCKLLILYSCAGILFLILSLLLIRGTIFGALYIVLGKRIWFFPNILAEEATLRELFRFWPKKDEEEKPKWTTRIFYAGVAVLFILLLRHHAPDEAARARYQKRVSNIIDDVLEWSPTLALSGRMEKQQNVANATGSADASKNGPEDAVPADGDDAKAFVEQYNNTEVIEDVDDDKQHD*

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