SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma18g07850): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma18g07850): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma18g07850

Feature Type:gene_model
Chromosome:Gm18
Start:6579544
stop:6583703
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g07850
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G19855AT Annotation by Michelle Graham. TAIR10: Chaperonin-like RbcX protein | chr5:6712166-6713445 REVERSE LENGTH=203 SoyBaseE_val: 1.00E-88ISS
GO:0061077GO-bp Annotation by Michelle Graham. GO Biological Process: chaperone-mediated protein folding SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0044183GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding involved in protein folding SoyBaseN/AISS
PF02341PFAM RbcX protein JGI ISS
UniRef100_I1N050UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N050_SOYBN SoyBaseE_val: 3.00E-164ISS
UniRef100_Q8L9X2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Chaperonin-like RbcX protein n=1 Tax=Arabidopsis thaliana RepID=Q8L9X2_ARATH SoyBaseE_val: 6.00E-86ISS

Expression Patterns of Glyma18g07850
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g07850 not represented in the dataset
Glyma18g07850 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g07850
ParalogEvidenceComments
Glyma08g45070 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g07850 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g070500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g07850
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g07850
>Glyma18g07850.1   sequence type=CDS   gene model=Glyma18g07850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGGTGCTCTATCTGTTGTGGGTTCATCAGTGATGGACTCTCACACTGGCCCTTGTTTGTGTGTTGATGCTCTCCCAACAACTAGTGTTAATCTCAAGAGTGGTGGAGATGTTTTGTGCAAGAATTTGATGGGAAGGAAGCATAATTTGGTGAAGCATGGTGGTGGGACCATGAAGTTGAGCAGTTCATTTGTTGATCCTGGAAGAGAGTGGAGGCTCTTTGTTAGCAAAAGTTGCAAGAGGCAGCGCAAGGATAGGAGAGTGACCATTGTTAATGAACTTGGAGGACAATATGAGGACACTTTTGAAGATGTTAAAGCGCAAATGCTCAACTATTTCACATACAAGGCTGTGAGGACTGTTCTTCATCAGTTGTATGAGATGAATCCACCTAAATACACGTGGTTCTATAATTTTGTTGCTTCAAACAAACCAGCAGATGGGAAACGTTTTATTCGATCCCTTGGGAAGGAGCAACAAGAGCTTGCTGAAAGAGTGATGGTAACTCGGCTTCACCTTTATGGAAAATGGGTCAAGAAATGTAATCATGCTGAGATATATCAAGAAATCTCTGATGAAAACTTGGAGTTAATGAGGGAACGGCTCATGGAGACAGTAATATGGCCCTCAGATGACACAAACACAGAAAAGATTGGCTGA
Predicted protein sequences of Glyma18g07850
>Glyma18g07850.1   sequence type=predicted peptide   gene model=Glyma18g07850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGALSVVGSSVMDSHTGPCLCVDALPTTSVNLKSGGDVLCKNLMGRKHNLVKHGGGTMKLSSSFVDPGREWRLFVSKSCKRQRKDRRVTIVNELGGQYEDTFEDVKAQMLNYFTYKAVRTVLHQLYEMNPPKYTWFYNFVASNKPADGKRFIRSLGKEQQELAERVMVTRLHLYGKWVKKCNHAEIYQEISDENLELMRERLMETVIWPSDDTNTEKIG*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo