Glyma18g07680 - SoyBase

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Report for Sequence Feature Glyma18g07680

Feature Type:	gene_model
Chromosome:	Gm18
Start:	6393830
stop:	6400095
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g07680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G07380	AT	Annotation by Michelle Graham. TAIR10: Neutral/alkaline non-lysosomal ceramidase \| chr1:2264829-2268306 REVERSE LENGTH=779	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0017040	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ceramidase activity	SoyBase	N/A	ISS
KOG2232	KOG	Ceramidases	JGI		ISS
PTHR12670	Panther	CERAMIDASE	JGI		ISS
PF04734	PFAM	Neutral/alkaline non-lysosomal ceramidase	JGI		ISS
UniRef100_G7K4V4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Neutral ceramidase n=1 Tax=Medicago truncatula RepID=G7K4V4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F245	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F245 related cluster n=1 Tax=unknown RepID=UPI000233F245	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g07680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g07680 not represented in the dataset	Glyma18g07680 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g07680

Paralog	Evidence	Comments
Glyma08g45100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g07680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g068800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g07680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g07680

Limit To All Plant Sequences

>Glyma18g07680.3   sequence type=transcript   gene model=Glyma18g07680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTAACCTTGTTCCTTTAAAACAATTTCATAGCAGCTATGCCCAAACTTGACAAAAGGGACGATGTGGTGTTGTGTGTTCGAATGCTGCGAATCTTAGGCTGAATGGAATTGTAAAATCTCGACATTTAGGACAAAGAAAGTTAATGTTTTATTTGTTTATTTATTGATGATTAGATGATGATGAGGAATAATAATGTCAAATTGGGAAGCTTCAAATTTCAGAGGGAAATTACCCATTCGTGTCTTCTCAAGGTCGTTGGCAGTTGGCACTTACAATTGCTTCCTACAAGTCAAGGGGAATGAGTAGAACTTGCTAAGCTTGGAAAAATTGGCCCTTTTTGCTTTGAAATTGAGTGTGTGATGGAGTTTCCTTCCTTTGATCATTTAAATGTTTGGAGGGCATGTGCAAATGTGCGAGTTTGGATCCTTTTCTTACTCCTGCTGCTACTGAAGAGTGATATTGCGTGTTCTGGTTCTGACTACTTGGTTGGTCTTGGAAGCTATGACATTACTGGCCCTGCTGCTGATGTTAACATGATGGGGTATGCTAACACAGGACAGATTGCATCTGGAATTCACTTCAGGCTGCGGGCTCGTGCTTTCATTGTTGCAGAGCCAAATGGTAACTGGGTAGTGTTTGTAAACCTTGATGCTTGCATGGCTTCACAGATTGTGAAGATCAAAGTAATTGAGAGGCTGAAAGCAAGATATGGTGATCTATATACTGAAGAGAATGTGGCCATTAGTGGAATTCACACTCATGCTGGTCCTGGGGGCTATCTCCAATATGTTGTGTACATTGTAACTTCTCTTGGATTTGTGCACCAGTCCTTTGATGTCATTGTCAATGGCATTGAGAAATGCATTATCCAGGCCCATGAAAATCTCCGCCCAGGATCAATATTTATCAATAAGGGAGAACTCTTAGATGGTGGTGTAAATCGCAGTCCCAGTGCTTATCTCAATAATCCTGCCACAGAGAGAAGAAAATATAAGTATAATGTTGATACAGAAATGACTCTTTTAAAATTTGTTGATGATGAATGGGGACCTGTTGGAAGCTTCAATTGGTTTCCTACTCATGGAACTTCAATGAGTCGTACAAACTCATTAATTAGTGGGGATAATAAAGGTGCTGCTGCACGATTTATGGAAGACTGGTTCGAGCAAAAAGATTATGGAAAAACAGATTCTGTTGTATTTGAAGATGATGTCTTGCTCCGAAGAATCTCAAATATAATTCCTAGCCGTCATGATAATCACCATGAATTACTGGAACTTGCTACCTCCTTCCAGTCTCCTCCTGGTAGACCTGTAAGCAAAACTTCGAGTGTTGCTAAACGAGTGAGAAGTGCTCATAGGAAGGTTGACAAGCCTCGATTTGTATCTGCATTCTGTCAATCAAATTGTGGAGATGTTAGTCCAAATGTGCTTGGAGCATTTTGCATAGACACTGGATTACCTTGTGACTTCAATCATAGTACATGTGGAGGGAAGAACGAATTATGCTATAGCCGGGGACCTGGCTACCCAGATGAATTTGAAAGTACCCGCATTATAGGAGAAAGACAATTTAGAAAAGCAGTGGATCTTTTTAATGCTGCAGATGAAGAGATTGAAGGGGGCGTTGATTTTCGACATGCATATATAGATTTCTCCCAACTTGAGGTAACTATTTCTGATCAAGGATATTCTGAGGTTGTAAAGACATGCCCTGCTGCAATGGGGTTTGCATTTGCGGCTGGAACAACAGATGGACCTGGAGCTTTTGATTTTCAGCAAGGTGATGATAAGGGCAATCCTTTCTGGAAGCTGGTCCGTGACATGCTTAAGACTCCAAGCAAGGAACAAACAGATTGTCAACGCCCAAAGCCTATTTTGCTAGATACTGGTGAAATGAAGAAACCATATGATTGGGCTCCTTCAATACTTCCAATTCAGATCCTCCGAATTGGGCAGCTTATCATTCTTAGTGTACCAGGAGAATTCACAACAATGGCCGGGAGGCGTCTTCGTGATGCAGTGAAGACAGTGCTAACTAGTGAAGAATATTTTGAATTTGATGACATTCACATTGTTATAGCAGGGTTAACTAATACTTATTCACAGTACATCACTACATACGAAGAGTACCAGGTGCAAAGATATGAGGGTGCTTCTACGCTATATGGTCCACACACACTCAGTGCATACATTCAGGAGTTTAAGAAACTTGCAGAGGCTCTCGTCTACGGCGAACCAGTAGAACCTGGTCCTCAACCTCCTGATCTCCTGGAGAAGCAAATAAGCTTACTTCCACCTGTTGTGGTGGATGCAACCCCCCTTGGTGTAAATTTTGGGGATGTTTGCACTGATGTACCACGGAACTCCACCTTCAAGAGTGGTGACTTGGTGACAGCTTCGTTCTGGTCTGCATGTCCTCGTAACGACCTTATGACTGAAGGCACCTTTGCACTGGTGGAATTTCTCCAAGAAAAGGATGCTTGGACTCCTGCTTATGATGATGATGATTTCTGCCTGCGCTATAAGTGGTCAAGGCCTTCCAAACTGAGTTCTAGGAGCAAAGCAACCTTGGAATGGAGGATACCACAGAGTGTGGCTCCTGGTGTGTACAGATTAAGACACTTTGGAGCTGCAAAGGGCTTATTTGGATCAATTCATCACTTTACAGGTTCATCCACTGCGTTTGTAGTAGCCTAAAGGGAGGCATGTTGTTTCAGCCGTTACTATATTTGTGATTTGTTTTTCTGAACTTTAGCAGAATCTATTCAATCCTAAAGAAGGATGTTTCACTATGGATCATCATCTGTTACCAGCTCGTCTTTATCCTCTTCCCCACAAATTCTACCGCTAACCGAATATTTGCTTAGTGTTGATATGGCAAAACTTACTCTTTAAAACTTGTTAACTACTTCTAGTTCAATCATTTACAATTTGAAAACTGCAGTTACATTTTTAAATATATTTATCATGAATAATCATCAAATTAGGATTTCACTGTAAATTATTTATAGCTTACTATTTCTTATGTTTTAAGATTCTGTTATTAAAATGAAATTCTG

Coding sequences of Glyma18g07680

Limit To All Plant Sequences

>Glyma18g07680.2   sequence type=CDS   gene model=Glyma18g07680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTTCCTTCCTTTGATCATTTAAATGTTTGGAGGGCATGTGCAAATGTGCGAGTTTGGATCCTTTTCTTACTCCTGCTGCTACTGAAGAGTGATATTGCGTGTTCTGGTTCTGACTACTTGGTTGGTCTTGGAAGCTATGACATTACTGGCCCTGCTGCTGATGTTAACATGATGGGGTATGCTAACACAGGACAGATTGCATCTGGAATTCACTTCAGGCTGCGGGCTCGTGCTTTCATTGTTGCAGAGCCAAATGGTAACTGGGTAGTGTTTGTAAACCTTGATGCTTGCATGGCTTCACAGATTGTGAAGATCAAAGTAATTGAGAGGCTGAAAGCAAGATATGGTGATCTATATACTGAAGAGAATGTGGCCATTAGTGGAATTCACACTCATGCTGGTCCTGGGGGCTATCTCCAATATGTTGTGTACATTGTAACTTCTCTTGGATTTGTGCACCAGTCCTTTGATGTCATTGTCAATGGCATTGAGAAATGCATTATCCAGGCCCATGAAAATCTCCGCCCAGGATCAATATTTATCAATAAGGGAGAACTCTTAGATGGTGGTGTAAATCGCAGTCCCAGTGCTTATCTCAATAATCCTGCCACAGAGAGAAGAAAATATAAGTATAATGTTGATACAGAAATGACTCTTTTAAAATTTGTTGATGATGAATGGGGACCTGTTGGAAGCTTCAATTGGTTTCCTACTCATGGAACTTCAATGAGTCGTACAAACTCATTAATTAGTGGGGATAATAAAGGTGCTGCTGCACGATTTATGGAAGACTGGTTCGAGCAAAAAGATTATGGAAAAACAGATTCTGTTGTATTTGAAGATGATGTCTTGCTCCGAAGAATCTCAAATATAATTCCTAGCCGTCATGATAATCACCATGAATTACTGGAACTTGCTACCTCCTTCCAGTCTCCTCCTGGTAGACCTGTAAGCAAAACTTCGAGTGTTGCTAAACGAGTGAGAAGTGCTCATAGGAAGGTTGACAAGCCTCGATTTGTATCTGCATTCTGTCAATCAAATTGTGGAGATGTTAGTCCAAATGTGCTTGGAGCATTTTGCATAGACACTGGATTACCTTGTGACTTCAATCATAGTACATGTGGAGGGAAGAACGAATTATGCTATAGCCGGGGACCTGGCTACCCAGATGAATTTGAAAGTACCCGCATTATAGGAGAAAGACAATTTAGAAAAGCAGTGGATCTTTTTAATGCTGCAGATGAAGAGATTGAAGGGGGCGTTGATTTTCGACATGCATATATAGATTTCTCCCAACTTGAGGTAACTATTTCTGATCAAGGATATTCTGAGGTTGTAAAGACATGCCCTGCTGCAATGGGGTTTGCATTTGCGGCTGGAACAACAGATGGACCTGGAGCTTTTGATTTTCAGCAAGGTGATGATAAGGGCAATCCTTTCTGGAAGCTGGTCCGTGACATGCTTAAGACTCCAAGCAAGGAACAAACAGATTGTCAACGCCCAAAGCCTATTTTGCTAGATACTGGTGAAATGAAGAAACCATATGATTGGGCTCCTTCAATACTTCCAATTCAGATCCTCCGAATTGGGCAGCTTATCATTCTTAGTGTACCAGGAGAATTCACAACAATGGCCGGGAGGCGTCTTCGTGATGCAGTGAAGACAGTGCTAACTAGTGAAGAATATTTTGAATTTGATGACATTCACATTGTTATAGCAGGGTTAACTAATACTTATTCACAGTACATCACTACATACGAAGAGTACCAGGTGCAAAGATATGAGGGTGCTTCTACGCTATATGGTCCACACACACTCAGTGCATACATTCAGGAGTTTAAGAAACTTGCAGAGGCTCTCGTCTACGGCGAACCAGTAGAACCTGGTCCTCAACCTCCTGATCTCCTGGAGAAGCAAATAAGCTTACTTCCACCTGTTGTGGTGGATGCAACCCCCCTTGGTGTAAATTTTGGGGATGTTTGCACTGATGTACCACGGAACTCCACCTTCAAGAGTGGTGACTTGGTGACAGCTTCGTTCTGGTCTGCATGTCCTCGTAACGACCTTATGACTGAAGGCACCTTTGCACTGGTGGAATTTCTCCAAGAAAAGGATGCTTGGACTCCTGCTTATGATGATGATGATTTCTGCCTGCGCTATAAGTGGTCAAGGCCTTCCAAACTGAGTTCTAGGAGCAAAGCAACCTTGGAATGGAGGATACCACAGAGTGTGGCTCCTGGTGTGTACAGATTAAGACACTTTGGAGCTGCAAAGGGCTTATTTGGATCAATTCATCACTTTACAGGTTCATCCACTGCGTTTGTAGTAGCCTAA

>Glyma18g07680.3   sequence type=CDS   gene model=Glyma18g07680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTTCCTTCCTTTGATCATTTAAATGTTTGGAGGGCATGTGCAAATGTGCGAGTTTGGATCCTTTTCTTACTCCTGCTGCTACTGAAGAGTGATATTGCGTGTTCTGGTTCTGACTACTTGGTTGGTCTTGGAAGCTATGACATTACTGGCCCTGCTGCTGATGTTAACATGATGGGGTATGCTAACACAGGACAGATTGCATCTGGAATTCACTTCAGGCTGCGGGCTCGTGCTTTCATTGTTGCAGAGCCAAATGGTAACTGGGTAGTGTTTGTAAACCTTGATGCTTGCATGGCTTCACAGATTGTGAAGATCAAAGTAATTGAGAGGCTGAAAGCAAGATATGGTGATCTATATACTGAAGAGAATGTGGCCATTAGTGGAATTCACACTCATGCTGGTCCTGGGGGCTATCTCCAATATGTTGTGTACATTGTAACTTCTCTTGGATTTGTGCACCAGTCCTTTGATGTCATTGTCAATGGCATTGAGAAATGCATTATCCAGGCCCATGAAAATCTCCGCCCAGGATCAATATTTATCAATAAGGGAGAACTCTTAGATGGTGGTGTAAATCGCAGTCCCAGTGCTTATCTCAATAATCCTGCCACAGAGAGAAGAAAATATAAGTATAATGTTGATACAGAAATGACTCTTTTAAAATTTGTTGATGATGAATGGGGACCTGTTGGAAGCTTCAATTGGTTTCCTACTCATGGAACTTCAATGAGTCGTACAAACTCATTAATTAGTGGGGATAATAAAGGTGCTGCTGCACGATTTATGGAAGACTGGTTCGAGCAAAAAGATTATGGAAAAACAGATTCTGTTGTATTTGAAGATGATGTCTTGCTCCGAAGAATCTCAAATATAATTCCTAGCCGTCATGATAATCACCATGAATTACTGGAACTTGCTACCTCCTTCCAGTCTCCTCCTGGTAGACCTGTAAGCAAAACTTCGAGTGTTGCTAAACGAGTGAGAAGTGCTCATAGGAAGGTTGACAAGCCTCGATTTGTATCTGCATTCTGTCAATCAAATTGTGGAGATGTTAGTCCAAATGTGCTTGGAGCATTTTGCATAGACACTGGATTACCTTGTGACTTCAATCATAGTACATGTGGAGGGAAGAACGAATTATGCTATAGCCGGGGACCTGGCTACCCAGATGAATTTGAAAGTACCCGCATTATAGGAGAAAGACAATTTAGAAAAGCAGTGGATCTTTTTAATGCTGCAGATGAAGAGATTGAAGGGGGCGTTGATTTTCGACATGCATATATAGATTTCTCCCAACTTGAGGTAACTATTTCTGATCAAGGATATTCTGAGGTTGTAAAGACATGCCCTGCTGCAATGGGGTTTGCATTTGCGGCTGGAACAACAGATGGACCTGGAGCTTTTGATTTTCAGCAAGGTGATGATAAGGGCAATCCTTTCTGGAAGCTGGTCCGTGACATGCTTAAGACTCCAAGCAAGGAACAAACAGATTGTCAACGCCCAAAGCCTATTTTGCTAGATACTGGTGAAATGAAGAAACCATATGATTGGGCTCCTTCAATACTTCCAATTCAGATCCTCCGAATTGGGCAGCTTATCATTCTTAGTGTACCAGGAGAATTCACAACAATGGCCGGGAGGCGTCTTCGTGATGCAGTGAAGACAGTGCTAACTAGTGAAGAATATTTTGAATTTGATGACATTCACATTGTTATAGCAGGGTTAACTAATACTTATTCACAGTACATCACTACATACGAAGAGTACCAGGTGCAAAGATATGAGGGTGCTTCTACGCTATATGGTCCACACACACTCAGTGCATACATTCAGGAGTTTAAGAAACTTGCAGAGGCTCTCGTCTACGGCGAACCAGTAGAACCTGGTCCTCAACCTCCTGATCTCCTGGAGAAGCAAATAAGCTTACTTCCACCTGTTGTGGTGGATGCAACCCCCCTTGGTGTAAATTTTGGGGATGTTTGCACTGATGTACCACGGAACTCCACCTTCAAGAGTGGTGACTTGGTGACAGCTTCGTTCTGGTCTGCATGTCCTCGTAACGACCTTATGACTGAAGGCACCTTTGCACTGGTGGAATTTCTCCAAGAAAAGGATGCTTGGACTCCTGCTTATGATGATGATGATTTCTGCCTGCGCTATAAGTGGTCAAGGCCTTCCAAACTGAGTTCTAGGAGCAAAGCAACCTTGGAATGGAGGATACCACAGAGTGTGGCTCCTGGTGTGTACAGATTAAGACACTTTGGAGCTGCAAAGGGCTTATTTGGATCAATTCATCACTTTACAGGTTCATCCACTGCGTTTGTAGTAGCCTAA

Predicted protein sequences of Glyma18g07680

Limit To All Plant Sequences

>Glyma18g07680.2   sequence type=predicted peptide   gene model=Glyma18g07680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEFPSFDHLNVWRACANVRVWILFLLLLLLKSDIACSGSDYLVGLGSYDITGPAADVNMMGYANTGQIASGIHFRLRARAFIVAEPNGNWVVFVNLDACMASQIVKIKVIERLKARYGDLYTEENVAISGIHTHAGPGGYLQYVVYIVTSLGFVHQSFDVIVNGIEKCIIQAHENLRPGSIFINKGELLDGGVNRSPSAYLNNPATERRKYKYNVDTEMTLLKFVDDEWGPVGSFNWFPTHGTSMSRTNSLISGDNKGAAARFMEDWFEQKDYGKTDSVVFEDDVLLRRISNIIPSRHDNHHELLELATSFQSPPGRPVSKTSSVAKRVRSAHRKVDKPRFVSAFCQSNCGDVSPNVLGAFCIDTGLPCDFNHSTCGGKNELCYSRGPGYPDEFESTRIIGERQFRKAVDLFNAADEEIEGGVDFRHAYIDFSQLEVTISDQGYSEVVKTCPAAMGFAFAAGTTDGPGAFDFQQGDDKGNPFWKLVRDMLKTPSKEQTDCQRPKPILLDTGEMKKPYDWAPSILPIQILRIGQLIILSVPGEFTTMAGRRLRDAVKTVLTSEEYFEFDDIHIVIAGLTNTYSQYITTYEEYQVQRYEGASTLYGPHTLSAYIQEFKKLAEALVYGEPVEPGPQPPDLLEKQISLLPPVVVDATPLGVNFGDVCTDVPRNSTFKSGDLVTASFWSACPRNDLMTEGTFALVEFLQEKDAWTPAYDDDDFCLRYKWSRPSKLSSRSKATLEWRIPQSVAPGVYRLRHFGAAKGLFGSIHHFTGSSTAFVVA*

>Glyma18g07680.3   sequence type=predicted peptide   gene model=Glyma18g07680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEFPSFDHLNVWRACANVRVWILFLLLLLLKSDIACSGSDYLVGLGSYDITGPAADVNMMGYANTGQIASGIHFRLRARAFIVAEPNGNWVVFVNLDACMASQIVKIKVIERLKARYGDLYTEENVAISGIHTHAGPGGYLQYVVYIVTSLGFVHQSFDVIVNGIEKCIIQAHENLRPGSIFINKGELLDGGVNRSPSAYLNNPATERRKYKYNVDTEMTLLKFVDDEWGPVGSFNWFPTHGTSMSRTNSLISGDNKGAAARFMEDWFEQKDYGKTDSVVFEDDVLLRRISNIIPSRHDNHHELLELATSFQSPPGRPVSKTSSVAKRVRSAHRKVDKPRFVSAFCQSNCGDVSPNVLGAFCIDTGLPCDFNHSTCGGKNELCYSRGPGYPDEFESTRIIGERQFRKAVDLFNAADEEIEGGVDFRHAYIDFSQLEVTISDQGYSEVVKTCPAAMGFAFAAGTTDGPGAFDFQQGDDKGNPFWKLVRDMLKTPSKEQTDCQRPKPILLDTGEMKKPYDWAPSILPIQILRIGQLIILSVPGEFTTMAGRRLRDAVKTVLTSEEYFEFDDIHIVIAGLTNTYSQYITTYEEYQVQRYEGASTLYGPHTLSAYIQEFKKLAEALVYGEPVEPGPQPPDLLEKQISLLPPVVVDATPLGVNFGDVCTDVPRNSTFKSGDLVTASFWSACPRNDLMTEGTFALVEFLQEKDAWTPAYDDDDFCLRYKWSRPSKLSSRSKATLEWRIPQSVAPGVYRLRHFGAAKGLFGSIHHFTGSSTAFVVA*

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