Glyma18g07560 - SoyBase

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Report for Sequence Feature Glyma18g07560

Feature Type:	gene_model
Chromosome:	Gm18
Start:	6247869
stop:	6251802
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g07560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G11320	AT	Annotation by Michelle Graham. TAIR10: Nucleotide-sugar transporter family protein \| chr3:3547017-3548539 REVERSE LENGTH=308	SoyBase	E_val: 0	ISS
GO:0006863	GO-bp	Annotation by Michelle Graham. GO Biological Process: purine nucleobase transport	SoyBase	N/A	ISS
GO:0016132	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0008514	GO-mf	Annotation by Michelle Graham. GO Molecular Function: organic anion transmembrane transporter activity	SoyBase	N/A	ISS
KOG1441	KOG	Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter	JGI		ISS
PTHR11132	Panther	SOLUTE CARRIER FAMILY 35	JGI		ISS
PF03151	PFAM	Triose-phosphate Transporter family	JGI		ISS
UniRef100_D7L9W2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Organic anion transporter n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L9W2_ARALL	SoyBase	E_val: 0	ISS
UniRef100_I1N037	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N037_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g07560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g07560

Paralog	Evidence	Comments
Glyma08g45110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g07560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g067900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g07560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g07560

Limit To All Plant Sequences

>Glyma18g07560.1   sequence type=CDS   gene model=Glyma18g07560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGTTTCAGTCTCGGGAAAGCTCTTCACAGTAGGGTTGATAAGTTTCTGGTACGCCTCCAACATAGGAGTGTTGCTGCTGAACAAGTACCTTCTGAGCAACCACGGTTTCAGGTACCCTATATTCCTAACACTGTGCCACATGATGGCTTGCTCAATTCTCAGCTACGTTGCCATTGCATGGCTCAAGATGGTGCCCATGCAAACGGTGCGTTCGAGGGTGCAGTTTGTGAAGATATCGTCGCTGGGACTCATATTCTGCTTGTCCGTGGTTGGGGGCAACATCTCCCTCCGCTACCTACCGGTGTCGTTCAACCAGGCCGTCGGCGCTACCACGCCGTTCTTCACGGCGGTGTTCGCCTATTTGATGACCCTCCGGAGGGAGGGTTGGCTCACGTATGTCACACTCCTCCCGGTTGTCGCTGGTGTTATTATTGCTAGTGGGGGAGAACCGAGTTTTCATCTATTTGGATTCATAATGTGCATCGCAGCTACAGCAGCCAGGGCACTCAAAACAGTGCTTCAAGGGGTCTTGCTGTCTTCTGAAGGGGAAAAGCTCAATTCTATGAACCTTCTTATGTACATGGCACCAGTGGCTGTTGCATTCCTTCTTCCAACTTCAATCATAATGGAGGAAGATGTAATTGGAATCACAATTTCACTTGCTAGAGAGGACTCAAGCATTTTGTGGTTGCTTATGTTCAATTCTGCATTGGCATATTTTGTCAATTTGACCAATTTCTTAGTCACAAAGCACACCAGCGCATTAACACTTCAGGTGCTAGGAAATGCAAAGGGAGCTGTGGCAGTTGTTATCTCCATTTTGATATTCCGAAATCCTGTATCAGTGACTGGAATGTGTGGATATTCTCTCACAGTCATTGGAGTCATCCTATATAGTGAAGCCAAGAAACGGGGTAAATAA

Predicted protein sequences of Glyma18g07560

Limit To All Plant Sequences

>Glyma18g07560.1   sequence type=predicted peptide   gene model=Glyma18g07560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKVSVSGKLFTVGLISFWYASNIGVLLLNKYLLSNHGFRYPIFLTLCHMMACSILSYVAIAWLKMVPMQTVRSRVQFVKISSLGLIFCLSVVGGNISLRYLPVSFNQAVGATTPFFTAVFAYLMTLRREGWLTYVTLLPVVAGVIIASGGEPSFHLFGFIMCIAATAARALKTVLQGVLLSSEGEKLNSMNLLMYMAPVAVAFLLPTSIIMEEDVIGITISLAREDSSILWLLMFNSALAYFVNLTNFLVTKHTSALTLQVLGNAKGAVAVVISILIFRNPVSVTGMCGYSLTVIGVILYSEAKKRGK*

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