Glyma18g07520 - SoyBase

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Report for Sequence Feature Glyma18g07520

Feature Type:	gene_model
Chromosome:	Gm18
Start:	6230858
stop:	6233229
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g07520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G37300	AT	Annotation by Michelle Graham. TAIR10: maternal effect embryo arrest 59 \| chr4:17554805-17555498 FORWARD LENGTH=173	SoyBase	E_val: 4.00E-25	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1N033	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1N033_SOYBN	SoyBase	E_val: 2.00E-123	ISS
UniRef100_Q10NL6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q10NL6_ORYSJ	SoyBase	E_val: 7.00E-43	ISS

Expression Patterns of Glyma18g07520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g07520

Paralog	Evidence	Comments
Glyma08g45150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g07520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g067500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g07520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g07520

Limit To All Plant Sequences

>Glyma18g07520.3   sequence type=transcript   gene model=Glyma18g07520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGAGGACGTACCAACTTGAAGAAATGTCAGCTCCAAAAATATCTGCCAGAGCCACCAACTCTTACAAATACACATCCCATTGAACAAGTTTTCATTGCACAACAAAAGGTAGGTGAGGAAAACTTTGGACAAAAAATGGAGTGCTACACAAGGCCAAACAGGAGTGACATCCACCTCTCAGCAGAGGAAGAAGCCACCATAGAAGCAAAGACCAGAGAGTACTTTGATGGAGTCGCACCACAACGCCACACAAAGCCTCAACGAAGTGACTATTCAGCTCAATATGTCGATGCTTTCTCCAATGCCCATCACTCTTCTTTAACTATACCAGAATTAACACAATTCCAACTCCTCCAGAATGATCCCCAAGAGAAGAAATTGGTGTACAATGGAAGTCAAGTACCGGAAGAATTTGTGGAAACAGAGTATTACCAAGATCTCAACAGCGTGGACAAACACCACCATACGGTATTCAGTTCAATCCTACTTGCATGCATTCTTCTCAAAATATTTGATGTGTCTCGCAAATACATATCTGCATTAATTTATATACTCGTTTCATTGAATTTGATTGCAAAATATTGAAACCATGTGTCCTTGTAATGAAGACTTTATATTCAACAGGTTACCTAGGCTTGTGTTTAGCATTTACAAATTA

Coding sequences of Glyma18g07520

Limit To All Plant Sequences

>Glyma18g07520.2   sequence type=CDS   gene model=Glyma18g07520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTGCTACACAAGGCCAAACAGGAGTGACATCCACCTCTCAGCAGAGGAAGAAGCCACCATAGAAGCAAAGACCAGAGAGTACTTTGATGGAGTCGCACCACAACGCCACACAAAGCCTCAACGAAGTGACTATTCAGCTCAATATGTCGATGCTTTCTCCAATGCCCATCACTCTTCTTTAACTATACCAGAATTAACACAATTCCAACTCCTCCAGAATGATCCCCAAGAGAAGAAATTGGTGTACAATGGAAGTCAAGTACCGGAAGAATTTGTGGAAACAGAGTATTACCAAGATCTCAACAGCGTGGACAAACACCACCATACGACTGGAACAGGATTTATCAAAGTAGAGAAAAATGGAAATGACTTTCACATAGAACCAGATAATGACACTGGTTGCCATCACTCTTGCAAGGGCAATCCAGCAACCAATGATTGGGTTCCTGCTCCTTCCACTGAGGTGGGTTTCAATTCAGGCAAACCTAACAGGAGTGACAACTAG

>Glyma18g07520.3   sequence type=CDS   gene model=Glyma18g07520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTGCTACACAAGGCCAAACAGGAGTGACATCCACCTCTCAGCAGAGGAAGAAGCCACCATAGAAGCAAAGACCAGAGAGTACTTTGATGGAGTCGCACCACAACGCCACACAAAGCCTCAACGAAGTGACTATTCAGCTCAATATGTCGATGCTTTCTCCAATGCCCATCACTCTTCTTTAACTATACCAGAATTAACACAATTCCAACTCCTCCAGAATGATCCCCAAGAGAAGAAATTGGTGTACAATGGAAGTCAAGTACCGGAAGAATTTGTGGAAACAGAGTATTACCAAGATCTCAACAGCGTGGACAAACACCACCATACGGTATTCAGTTCAATCCTACTTGCATGCATTCTTCTCAAAATATTTGATGTGTCTCGCAAATACATATCTGCATTAATTTATATACTCGTTTCATTGAATTTGATTGCAAAATATTGA

Predicted protein sequences of Glyma18g07520

Limit To All Plant Sequences

>Glyma18g07520.2   sequence type=predicted peptide   gene model=Glyma18g07520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MECYTRPNRSDIHLSAEEEATIEAKTREYFDGVAPQRHTKPQRSDYSAQYVDAFSNAHHSSLTIPELTQFQLLQNDPQEKKLVYNGSQVPEEFVETEYYQDLNSVDKHHHTTGTGFIKVEKNGNDFHIEPDNDTGCHHSCKGNPATNDWVPAPSTEVGFNSGKPNRSDN*

>Glyma18g07520.3   sequence type=predicted peptide   gene model=Glyma18g07520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MECYTRPNRSDIHLSAEEEATIEAKTREYFDGVAPQRHTKPQRSDYSAQYVDAFSNAHHSSLTIPELTQFQLLQNDPQEKKLVYNGSQVPEEFVETEYYQDLNSVDKHHHTVFSSILLACILLKIFDVSRKYISALIYILVSLNLIAKY*

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