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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G46960 | AT | Annotation by Michelle Graham. TAIR10: RNA helicase, ATP-dependent, SK12/DOB1 protein | chr3:17291004-17298067 REVERSE LENGTH=1347 | SoyBase | E_val: 0 | ISS |
| GO:0006813 | GO-bp | Annotation by Michelle Graham. GO Biological Process: potassium ion transport | SoyBase | N/A | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0031048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA | SoyBase | N/A | ISS |
| GO:0035864 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to potassium ion | SoyBase | N/A | ISS |
| GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0004386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: helicase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008026 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity | SoyBase | N/A | ISS |
| GO:0016817 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides | SoyBase | N/A | ISS |
| GO:0016818 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | SoyBase | N/A | ISS |
| KOG0947 | KOG | Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily | JGI | ISS | |
| PTHR11752 | Panther | HELICASE SKI2W | JGI | ISS | |
| PTHR11752:SF2 | Panther | HELICASE SKI2-RELATED | JGI | ISS | |
| PF00270 | PFAM | DEAD/DEAH box helicase | JGI | ISS | |
| PF00271 | PFAM | Helicase conserved C-terminal domain | JGI | ISS | |
| PF08148 | PFAM | DSHCT (NUC185) domain | JGI | ISS | |
| UniRef100_B9S370 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Helicase, putative n=1 Tax=Ricinus communis RepID=B9S370_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233EB5B | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EB5B related cluster n=1 Tax=unknown RepID=UPI000233EB5B | SoyBase | E_val: 0 | ISS |
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Glyma18g07510 not represented in the dataset |
Glyma18g07510 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g067400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g07510.1 sequence type=CDS gene model=Glyma18g07510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCCGATCCAAGCTGCCAATGAGCTCGCTTTCCGGGTCGGGTTCTCCGGCCACAGTGGCCACCTCCGCCTGGAGCCGCTCTCCACGGAGGAGCGCCGCAACCCGCTCCGCTCCATTCCCGATTTCATTCCGCCACCTGCCTTTCCTAGCGAGACGCCTGAATCTATAAAGAAGTACATAGAAGAGACATATCTCCAGCCAAGATTGGATCCTGATGATTTTTCGCCAGAAAAAGTTGGGAGGCAGTGGGAATTTGATTGGTTTGACAGGGCTAAAGTTCCTCTAGAGCCGTCATTGCCACGAACTATGGTAGTTCCAGTTTGGGAACCACCATTTCGACGTTCAAACAATGGATCAGTGAAAGGAATCTGGGAACCAAAATTTGAGGAGGTGGATGTAGCAGATCTGACATCAGGAGCTGTAGAATCTGGGCCATTACCGCGCACTTCTGGAAAGGACTTTGTTAGAGGAAGCATCAATAATCGTCCTTTTCGTCCAGGAGGTTTGGATGATTCCCGAAGTTTAGACAGAATTCTTCCAGAAGGTGCTTCAAATGGTGAATGGGTGCATGAAATTTTGAATGGTGGTCCTGCTCAGACAATTCCTCCAAGCTTAAAGCAAGGATTGGACTTTGGCATGCTCAAGCCCTATCCGTGCTCGTGGAATGTCTGCAAGGAAGCCAATTCCCTCAAGAGTTCATCAGATGAAAAATTGAGTGGATTGTCCGTACAATTTGATGACTTATTTAAGAAGGCATGGGATGAGGATGCTGTTGGAGATCAAGAAGATGGTCATTTATCAGAAGTGGAGACTATTACATTGGAAGCTGAAGTTGGTACAACTGAGGTATCCAGTAGAGCACATGAGAGTGAAATGTCACTTGATGATATTTTGTCAGCTGACTCAGAAGGATCAAAACTGCATTTGGATGGATTTAATGATGAAATTGGACAGCAGAAGAAGGAAGCTTGGGCTATACATGAAACCAGTGAACAAATTGTAGATTCCTTTCATGAACTTGTTCCTGACATGGCGCTAGAGTTTCCCTTTGAATTGGATGCATTTCAGAAGGAGGCTATTTATTATCTTGAGAAGGGGGAATCTGTTTTTGTGGCTGCTCACACATCTGCTGGAAAGACAGTGGTTGCCGAATATGCATTTGCTCTAGCATCAAAACATTGCACGAGAGCTGTGTATACTGCTCCAATAAAAACCATCAGCAATCAGAAATATAGAGATTTATGTGGGAAGTTTGATGTTGGGCTTCTTACTGGTGATGTAAGCTTGAGGCCAGAGGCTTCTTGTCTCATCATGACCACAGAAATTTTAAGATCAATGCTCTACCGGGGTGCTGATATTATTCGAGACATTGAATGGGTTATATTTGATGAGGTGCACTACGTCAATGATGTTGAAAGAGGAGTTGTTTGGGAAGAAGTAATTATCATGCTTCCAAGACATATCAATATCGTCCTCCTTTCCGCCACGGTTCCTAATACTATTGAATTTGCCGATTGGATTGGCAGGACAAAACAAAAGGAAATAAGGGTTACGGGGACAACAAAAAGACCTGTCCCATTGGAGCACTGCCTGTTTTATTCTGGAGAACTTTACAAAATTTGTGAAAGTGAAAAATTTCTGCCTCAGGGATTGAAAGCTGCTAAAAAAGAGGCTTCAAGAAAAAAGAATTTGACTGCTGGTGGTGGTTCTGGACCAAAGCCAGGTATTTCACCAGGTCATGACAAAGCTCGAGTTCAAAAACGTGAAAATACATCTCACACTAAACATCATGGAGCTAATTTCTATGGAACTGGTAGAGGCTATCAGAATAATGGCAATGGCCAGAGCAATTGGGAACTGAGGAGAGCAGATGCTTCAATGTTGTTGATGCTTATCAACAAACTCTCCAAAAAGTCATTATTGCCTGTGGTTATATTTTGTTTTTCTAAGAATCGCTGTGATAAATCAGCTGATAGTCTGACTGGAACTGACCTCACTAGTAGCTCAGAGAAAAGTGAGATCCGACTTTTCTGTGACAAAGCATTTTCACGACTGAAGGGATCTGACAAAAATTTACCACAGGTTGTTCGAGTACAAAATCTTCTTCGCAGAGGTATTGGTGTGCATCATGCTGGCCTTCTTCCAATTGTAAAGGAAGTTGTTGAAATGCTATTTTGTCGTGGGGTTATCAAGGTCTTGTTTTCAACGGAGACATTTGCAATGGGAGTCAACGCACCTGCTAGAACGGTAGTCTTTGATACTCTAAGGAAGTTTGATGGCAAGGAATTTAGGCAGTTACTAGCAGGGGAATATACTCAAATGGCTGGTCGTGCTGGCAGAAGAGGACTTGATAAGATTGGTACTGTTATTTTGATGTGCCGTGATGAACTCCCAGAAGAGAGTGATTTAGAGCCTGTCATTGTTGGAAGTGCAACTCGCCTTGAATCTCAATTTCGGCTAACTTATATTATGATTCTACATCTCCTTCGAGTTGAGGAATTAAAGGTAGAGGACATGCTTAAAAGAAGTTTTGCAGAATTCCATGCTCAGAAAAAACTTCCAGAAATGCAACAGCTGTTGAAGAGAAAGCTTAATCAGCCCACAAAGGCTATTGAATGTTTAAAGGGTGAACCAACCATTGAAGAATACTATGATTTATATTTAGAAGCAGAGACATACAGCAACCAGATATCAGAAGCAATTTTGCAGTCTCCTAGTGCACAACAATTTCTCAATACTGGAAGAGTTGTAATTGTAAAATCAGAATCAGCGCAGGACCACTTGCTTGGAGTGGTTGTGGAAACTCCATCTCCAACTAATAAGATGTACATTGTTTTTGTGATTAAACCTGACATGCCATCCTCAGTGGATAATGCCTCGAGTAGCGGTAATATGCAGAATAAAAGTGGTGCATTCGACCAAGGTTATTTTGTAATGCCGAAATCAAGACGTGTTGTTGTAGATGAATATAGTACATCTGTTTCTGCCCGCAAAGGGAAAGGTGTCATCACCATCAGATTGCCCTATTCTGGCTCTGCCTGTGGAATGGGCTATGAAGTCCGAGAAGTTGACAGTAAAGAGTTTCTGTGCATATGCAGTAGCAAAATTAAAATTGACCGAGTTGGGCTTCTTGAAGATATTAGCAGTTCTGTTTATTCGAAGACTGTTCAGCTGCTCATGGATTTGAAATCAGATGGAAATAAGTATCCTCCAGCTTTGGATCCTGTGAAAGATCTAAAGTTGAGAGATGTGAAACTTGTGGCAACATACCATAAGTGGACTAGATTATTGGAGAAGATGTCCCAGAATCAGTGCCATGGGTGTATAAAATTGGAAGAACATCTGAAATTGGCAAAGGAGATAAAGAAACACAAAGAAGAAGTCTATGCTCTTCAGTTTCAAATGTCAGATGAAGCACTTAAACAGATGCCTGACTTTCAGGGCCGGATTGATGTTCTGAAGCAAATTGGATGCATTGATGAAGACCTCGTTGTTCAAATGAAAGGCCGTGTTGCTTGTGAGATGAATTCTGGGGAGGAACTGATATGTACTGAGTGCTTGTTTGAGAACCAAATGGATGAACTGGAACCAGAAGAAGCAGTGGCGATAATGTCAGCTTTTGTGTTCCAGCAGAAGAATACGTCTGAACCTTCACTCACACCCAAGCTGTCTGAAGCGAAACACAGATTATACCAAACAGCTATAAGACTTGGAGAGCTCCAAGCACACTTTAATCTACCAATAAACCCTGCTGAGTATGCCCAAGAAAATCTCAAATTTGGTCTCGTTGAAGTGGTTTATGAATGGGCAAAGGGTACTCCGTTTGCTGACATTTGTGAGCTCACTGATGTTCCTGAAGGTCTGATAGTAAGGACCATTGTCAGGTTGGACGAGACATGTCGGGAGTTCAAAAATGCTGCAGCTATTATGGGTAATTCTGCTCTCTGCAAAAAAATGGAAATTGCTTCTAATGCAATAAAGCGTGACATTGTATTTGCAGCTAGCTTGTATATTACTGGCGTATGA
>Glyma18g07510.1 sequence type=predicted peptide gene model=Glyma18g07510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDPIQAANELAFRVGFSGHSGHLRLEPLSTEERRNPLRSIPDFIPPPAFPSETPESIKKYIEETYLQPRLDPDDFSPEKVGRQWEFDWFDRAKVPLEPSLPRTMVVPVWEPPFRRSNNGSVKGIWEPKFEEVDVADLTSGAVESGPLPRTSGKDFVRGSINNRPFRPGGLDDSRSLDRILPEGASNGEWVHEILNGGPAQTIPPSLKQGLDFGMLKPYPCSWNVCKEANSLKSSSDEKLSGLSVQFDDLFKKAWDEDAVGDQEDGHLSEVETITLEAEVGTTEVSSRAHESEMSLDDILSADSEGSKLHLDGFNDEIGQQKKEAWAIHETSEQIVDSFHELVPDMALEFPFELDAFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDLCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVERGVVWEEVIIMLPRHINIVLLSATVPNTIEFADWIGRTKQKEIRVTGTTKRPVPLEHCLFYSGELYKICESEKFLPQGLKAAKKEASRKKNLTAGGGSGPKPGISPGHDKARVQKRENTSHTKHHGANFYGTGRGYQNNGNGQSNWELRRADASMLLMLINKLSKKSLLPVVIFCFSKNRCDKSADSLTGTDLTSSSEKSEIRLFCDKAFSRLKGSDKNLPQVVRVQNLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKEFRQLLAGEYTQMAGRAGRRGLDKIGTVILMCRDELPEESDLEPVIVGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHAQKKLPEMQQLLKRKLNQPTKAIECLKGEPTIEEYYDLYLEAETYSNQISEAILQSPSAQQFLNTGRVVIVKSESAQDHLLGVVVETPSPTNKMYIVFVIKPDMPSSVDNASSSGNMQNKSGAFDQGYFVMPKSRRVVVDEYSTSVSARKGKGVITIRLPYSGSACGMGYEVREVDSKEFLCICSSKIKIDRVGLLEDISSSVYSKTVQLLMDLKSDGNKYPPALDPVKDLKLRDVKLVATYHKWTRLLEKMSQNQCHGCIKLEEHLKLAKEIKKHKEEVYALQFQMSDEALKQMPDFQGRIDVLKQIGCIDEDLVVQMKGRVACEMNSGEELICTECLFENQMDELEPEEAVAIMSAFVFQQKNTSEPSLTPKLSEAKHRLYQTAIRLGELQAHFNLPINPAEYAQENLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFKNAAAIMGNSALCKKMEIASNAIKRDIVFAASLYITGV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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