SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g07495

Feature Type:gene_model
Chromosome:Gm18
Start:6202250
stop:6205960
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g07495
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G07350AT Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:2257732-2260101 REVERSE LENGTH=382 SoyBaseE_val: 1.00E-56ISS
GO:0008380GO-bp Annotation by Michelle Graham. GO Biological Process: RNA splicing SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0043484GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of RNA splicing SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
KOG4205 KOG RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 JGI ISS
PTHR15241Panther TRANSFORMER-2-RELATED JGI ISS
PF00076PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI ISS
UniRef100_B9S368UniRef Annotation by Michelle Graham. Most informative UniRef hit: FUS-interacting serine-arginine-rich protein 1, putative n=1 Tax=Ricinus communis RepID=B9S368_RICCO SoyBaseE_val: 3.00E-71ISS
UniRef100_UPI000233F0E6UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F0E6 related cluster n=1 Tax=unknown RepID=UPI000233F0E6 SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g07495
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g07495 not represented in the dataset
Glyma18g07495 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g07495
ParalogEvidenceComments
Glyma08g45200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g07495 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g067300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g07495
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g07495
>Glyma18g07495.1   sequence type=CDS   gene model=Glyma18g07495   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGCCTCCAAAGAACCACAACCTCACGCTTCTCCCTCTATATAAACCTCTTCACCCTCGCCACGTTTGTTTTCCCTTAACGCAAACTGTCATCTTGTCATTCACCGAGAAAGTCGTACTGATTCCTCTTCATCTTTCGTTAAAGCGAGTACTTTTCGTTCTTGATCTGTTGGTTACGATGTCGTATTCAAGGAGATCTAGGTATTCTCCTTCTCCTTCTCCTTCTCCATACAAGCGATACGGTAGGTCTGTGTCCAGGTCTCTCTCAATATCAAGATCCAGAAGCCGTTCAAGGAGTTTATCAAGAGATGCAGAAAATCCAGGAAACAATTTGTATGTGACAGGATTGTCTCCTAGGATTACCAAGAGAGAACTGGAGAAACATTTTGCTGCTGAAGGAAAAGTGATAGATGTCCATCTGGTAGTTGATCCTTGGACAAGGGAATCCCGTGGGTTTGGCTTTGTGACAATGGAGACTCTTGAGGAGGCTGAACGATGTGTAAAGTATCTGAATCGCTCTGTACTTGAAGGGCGTGTCATCACGGTGGAGAAGGCTAAAAGACGACGTGGTCGAACCCCAACGCCAGGGAGGTATCTAGGACTGAGAACTATTCGTGCTCGACGTCGCTCTCCAAGTTACTCTCCTCGTCGCTCTCCTAGCTATTCTCCCTTCAGAAGAAGCTACAGTCGCTCTCCCTATTCTTCAGACCGAAGTAGGAGTCGTTCTTACTCTCCTGACTATCAGAGGAGGAGGTCTTACTCTCCATATCACTCCAGGCGGAGGTCTTACTCTCCATTCTATAGCCGGTACAGGTCCTATTCTCGATATGATCGACACAGGTCATATTCTCGATCTCGCTCTCCGTATAGCAGGTCACCTGTCAGCATGCATGACAGATCATACTCTCCCTATGAAATACGATATGACTCGCCGGATGCGCACTCCTACAGAAGGCACCGTTACCGATCTGTTTCACGAAGTGCCTCGCCTGATGATCCTTATTATGGAAGGCACCGTTACAGGTCTGTTTCTCGGAGTGCCTCACCCAGGCCAAGGAGAAGGTCAAGGAGGAGCTACTCACGGAGTGCTACACCTGTTTCAAAGAGAAGCAACTCACGAAATGTGTCCCCCAGGTCAAGGAGGAGCCATTCAAGAAGCTCTAAGAGGAGTGGCAAATGTGAGAAACGCTACTCAAGAAGCTCGAGTGTGAATGCAAGTTCAAGATCAGTATCGAGGTCAAATACTCCAAGGTCTACCTCTCCTTCAACTTGA
Predicted protein sequences of Glyma18g07495
>Glyma18g07495.1   sequence type=predicted peptide   gene model=Glyma18g07495   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
KPPKNHNLTLLPLYKPLHPRHVCFPLTQTVILSFTEKVVLIPLHLSLKRVLFVLDLLVTMSYSRRSRYSPSPSPSPYKRYGRSVSRSLSISRSRSRSRSLSRDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMETLEEAERCVKYLNRSVLEGRVITVEKAKRRRGRTPTPGRYLGLRTIRARRRSPSYSPRRSPSYSPFRRSYSRSPYSSDRSRSRSYSPDYQRRRSYSPYHSRRRSYSPFYSRYRSYSRYDRHRSYSRSRSPYSRSPVSMHDRSYSPYEIRYDSPDAHSYRRHRYRSVSRSASPDDPYYGRHRYRSVSRSASPRPRRRSRRSYSRSATPVSKRSNSRNVSPRSRRSHSRSSKRSGKCEKRYSRSSSVNASSRSVSRSNTPRSTSPST*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo