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Report for Sequence Feature Glyma18g07460

Feature Type:gene_model
Chromosome:Gm18
Start:6147456
stop:6164941
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g07460
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G29890AT Annotation by Michelle Graham. TAIR10: villin-like 1 | chr2:12744597-12749474 FORWARD LENGTH=909 SoyBaseE_val: 0ISS
GO:0000226GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization SoyBaseN/AISS
GO:0000911GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation SoyBaseN/AISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0006342GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing SoyBaseN/AISS
GO:0006346GO-bp Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing SoyBaseN/AISS
GO:0007010GO-bp Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization SoyBaseN/AISS
GO:0007015GO-bp Annotation by Michelle Graham. GO Biological Process: actin filament organization SoyBaseN/AISS
GO:0009965GO-bp Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis SoyBaseN/AISS
GO:0016246GO-bp Annotation by Michelle Graham. GO Biological Process: RNA interference SoyBaseN/AISS
GO:0016569GO-bp Annotation by Michelle Graham. GO Biological Process: covalent chromatin modification SoyBaseN/AISS
GO:0016572GO-bp Annotation by Michelle Graham. GO Biological Process: histone phosphorylation SoyBaseN/AISS
GO:0022402GO-bp Annotation by Michelle Graham. GO Biological Process: cell cycle process SoyBaseN/AISS
GO:0030835GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of actin filament depolymerization SoyBaseN/AISS
GO:0031047GO-bp Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA SoyBaseN/AISS
GO:0031048GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA SoyBaseN/AISS
GO:0042127GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell proliferation SoyBaseN/AISS
GO:0045010GO-bp Annotation by Michelle Graham. GO Biological Process: actin nucleation SoyBaseN/AISS
GO:0048523GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of cellular process SoyBaseN/AISS
GO:0051225GO-bp Annotation by Michelle Graham. GO Biological Process: spindle assembly SoyBaseN/AISS
GO:0051258GO-bp Annotation by Michelle Graham. GO Biological Process: protein polymerization SoyBaseN/AISS
GO:0051322GO-bp Annotation by Michelle Graham. GO Biological Process: anaphase SoyBaseN/AISS
GO:0051567GO-bp Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0015629GO-cc Annotation by Michelle Graham. GO Cellular Compartment: actin cytoskeleton SoyBaseN/AISS
GO:0003779GO-mf Annotation by Michelle Graham. GO Molecular Function: actin binding SoyBaseN/AISS
GO:0051015GO-mf Annotation by Michelle Graham. GO Molecular Function: actin filament binding SoyBaseN/AISS
KOG0443 KOG Actin regulatory proteins (gelsolin/villin family) JGI ISS
PTHR11977Panther VILLIN JGI ISS
PTHR11977:SF9Panther FLIGHTLESS-1-RELATED JGI ISS
PF00626PFAM Gelsolin repeat JGI ISS
PF02209PFAM Villin headpiece domain JGI ISS
UniRef100_B9SI12UniRef Annotation by Michelle Graham. Most informative UniRef hit: Villin 1-4, putative n=1 Tax=Ricinus communis RepID=B9SI12_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000233EB5AUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EB5A related cluster n=1 Tax=unknown RepID=UPI000233EB5A SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g07460
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g07460
ParalogEvidenceComments
Glyma08g45223 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g07460 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g067000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g07460
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g07460
>Glyma18g07460.1   sequence type=CDS   gene model=Glyma18g07460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTACTGCCACTAAAGATATGGATTTCGCATTCCAAACTGCAGGAGCAAACCCAGGCTTAGAAGTTTGGTGTATTGAGAACCAGCGGTTGGTTTCGGTGTCAAAGTCAAGCCATGGAAAATTCTATACTGGAAGTGCATACTTAGTCTTGAATGCAGTCTTTCCAAAAATTGGCCCTCCTCAGTATGACATACATTACTGGTTGGGAAATGAAGCCAAGAAGGTAGACTCAAGCTTGGCATCAGACAAGGCACTTGAACTGGATGCAGCCTTAGGATCGTGTAGTGTTCAATACAGGGAAATTCAAGGCCAAGAATCGCAGAAGTTTCTGTCATACTTCAGACCTTGTCTTATACCCATTGAAGGAGTGTTTACTTCAAAGCAGGGGAACCTGAATGGTGAATACCATGTCAGCCTGTATACTTGCAAGGGAGACTATGTTGTTTACGTGAAAGAAGTGCCATTTCTGAGGTCATCGTTGAATCATGAAGATGTATTCATTCTTGACACTGCCTTAAAAATCTTCCTCTTCAGTGGGTGCAACTCTACCATTCAAGAAAGAGCCAAAGCTTTGGAGGTTGTTCAGTATATCAAGGAGAATAAGCATGGTGGAAAATGCGAAGTGGCAACAATAGAGGATGGAAAATTTGTTGGTGATTCTGATGTGGGTGAATTCTGGAGTTTATTTGGTGGTTATGCTCCCATTCCTCGAGATTCGCCTTCTGTTCAGGAATCTGAGGCTCCTCCTGTAAAGCTATTTTGGATAAATTTACAGGGAAAACTTTGTGAAACTGGAAGCAATGCTTTCAGCAAAGAAATGCTTGAGACAGACAAGTGTTATATGTTGGACTGTGATGGTGAGATTTTTGTCTGGATGGGAAGGCAGACTTTATTGACAGAAAGAAGAACAACAATCAGAGCTGTAGAAGAATTTGTCAGAAATGAAGGCAGATCAAACAAGACTCATTTGACATTTTTATCAGAAGGATTGGAAAGTACCATCTTTCGGTCTTACTTTACTAATTGGCCTAAAACAGTGGAGCCTAGGCTTTATGAGGAAGGCAAAGAAAAAGTGGCAGCCATATTCAAGCACCAGGGTTATGAGGTGAAAGAGCTTCCTGAAGAAGACAATGAGCCATCTATAGATTGCAGTGGCACAATAAAAGTTTGGCGGGTGGATGGTGATGAATTGTCCCTTCTTTCAGTTGCAGAACTGACAAAGCTTTACAGTGGAGATTGCTATATAGTACAGTATACATTTCTGGGAAATGGAAGGGATGAGACACTATTTTATGCTTGGCTTGGCTCCAAATGTGTAATGGAGGATAAAGCAGCTGCCATTTCCCACATGAGTACTATGGCCGATTCAATCAGAACTAATCCTGTTATGGCTCAAATCCATGAGGGTAAGGAACCAGCTCAGTTTTTCTCAATACTTCAGAGATTAATCATATTGAAGGGGGGAAACAGTTCAGGATATAGGAAGTTTATAGAAGAAAAAGGTATAGTGGATGAAACATACAATGAAAACCTGGTTGCTTTGTTTCGGGTACAAGGTACAAGTCCAGATAATATGCAGGCCATCCAAGTTGATCAAGTTTCAACCTCCCTGAATTCATCCTATTGCTACATTCTGCAAAGTAAAGCATCTATCTATACTTGGATTGGGAGCCTATCTTCAGCTAGAGACCATAATCTCCTTGATAGAATGGTGGAACTATCTAATCCAACATGGCTACCTGTTTCTGTGAGGGAAGGGAATGAGCCTGATATTTTCTGGGATGCTCTCAGTGGAAAAGCAGAGTATCCAAAGGGCAAAGAAATTCAAGGATTCATAGATGACCCACATTTGTTTGCATTAAAAATAACGAGAGGAGACTTCAAGGTCAAAGAGATATACAACTATACACAGGATGACTTAATAACTGAAGATGTTTTATTGCTTGATTGCCAAAGAGAGATTTATGTGTGGGTTGGTTTACATTCGGCTGTCAAATCAAAACAAGAAGCTCTTAATCTTGGCCTGAAATTTCTGGAAATGGATGTCCTTGTTGAAGGCCTATCCCTGAACATCCCTATTTATATTGTAACGGAAGGTCATGAGCCACCTTTTTTCACTCGTTTCTTTTCATGGGATCACTCAAAAGAAAATATTTTTGGTAACTCATTCGAGAGAAAGCTTGCAATTCTGAAAGGAAAACCAAAATCTCTAGAGGGACATAATAGAACCCCATTGAAAGCAAACTCCAGGCCTTCTACTCCTGATGGTCACGGAAGCATTTCTGTTTTCTCCAATGGACGTGGAAGAAGTAGTTCACCTATACCTAGTAGTGCAGGCTCAGATCTTAGGCAATCAGGTGATAGGAGTCTTTCTAGCTCTACTCCAGTTGTCAAGAAGCTCTTCGAAGGATCTCCTTCCCAGAGTAGTGCTGGAAAAACAATGCCACAGTCTGGTTCTCCAGCAACAGAACTGAGCTCATCTGATGAGACCGCGAGTTTCCCTCAGAAGGATAGAAATGTGGATGGTGAGAATACGGCAATATACCCCTATGAGCGCCTGAGAGTGGTTTCTGCTAATCCAGTAACTGGCATCGATTTGACAAAAAGAGAGGTATATTTATCTAATGAAGAGTTCCGCGAGAAGTTTGGAATGCCAAAATCTGCTTTCTATAAGCTTCCTAGATGGAAACAAAACAAACTGAAGATGTCTCTGGATCTATTTTAG
Predicted protein sequences of Glyma18g07460
>Glyma18g07460.1   sequence type=predicted peptide   gene model=Glyma18g07460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPTATKDMDFAFQTAGANPGLEVWCIENQRLVSVSKSSHGKFYTGSAYLVLNAVFPKIGPPQYDIHYWLGNEAKKVDSSLASDKALELDAALGSCSVQYREIQGQESQKFLSYFRPCLIPIEGVFTSKQGNLNGEYHVSLYTCKGDYVVYVKEVPFLRSSLNHEDVFILDTALKIFLFSGCNSTIQERAKALEVVQYIKENKHGGKCEVATIEDGKFVGDSDVGEFWSLFGGYAPIPRDSPSVQESEAPPVKLFWINLQGKLCETGSNAFSKEMLETDKCYMLDCDGEIFVWMGRQTLLTERRTTIRAVEEFVRNEGRSNKTHLTFLSEGLESTIFRSYFTNWPKTVEPRLYEEGKEKVAAIFKHQGYEVKELPEEDNEPSIDCSGTIKVWRVDGDELSLLSVAELTKLYSGDCYIVQYTFLGNGRDETLFYAWLGSKCVMEDKAAAISHMSTMADSIRTNPVMAQIHEGKEPAQFFSILQRLIILKGGNSSGYRKFIEEKGIVDETYNENLVALFRVQGTSPDNMQAIQVDQVSTSLNSSYCYILQSKASIYTWIGSLSSARDHNLLDRMVELSNPTWLPVSVREGNEPDIFWDALSGKAEYPKGKEIQGFIDDPHLFALKITRGDFKVKEIYNYTQDDLITEDVLLLDCQREIYVWVGLHSAVKSKQEALNLGLKFLEMDVLVEGLSLNIPIYIVTEGHEPPFFTRFFSWDHSKENIFGNSFERKLAILKGKPKSLEGHNRTPLKANSRPSTPDGHGSISVFSNGRGRSSSPIPSSAGSDLRQSGDRSLSSSTPVVKKLFEGSPSQSSAGKTMPQSGSPATELSSSDETASFPQKDRNVDGENTAIYPYERLRVVSANPVTGIDLTKREVYLSNEEFREKFGMPKSAFYKLPRWKQNKLKMSLDLF*






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