SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g07444

Feature Type:gene_model
Chromosome:Gm18
Start:6129495
stop:6135040
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g07444
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G29680AT Annotation by Michelle Graham. TAIR10: cell division control 6 | chr2:12689586-12692854 FORWARD LENGTH=508 SoyBaseE_val: 0ISS
GO:0006260GO-bp Annotation by Michelle Graham. GO Biological Process: DNA replication SoyBaseN/AISS
GO:0006261GO-bp Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication SoyBaseN/AISS
GO:0051726GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
KOG2227 KOG Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase JGI ISS
PTHR10763Panther ORIGIN OF REPLICATION BINDING PROTEIN JGI ISS
PTHR10763:SF7Panther CDC6 JGI ISS
PF00004PFAM ATPase family associated with various cellular activities (AAA) JGI ISS
PF09079PFAM CDC6, C terminal JGI ISS
UniRef100_B9SI02UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cdc6, putative n=1 Tax=Ricinus communis RepID=B9SI02_RICCO SoyBaseE_val: 0ISS
UniRef100_I1KYU8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KYU8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g07444
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g07444 not represented in the dataset
Glyma18g07444 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g07444
ParalogEvidenceComments
Glyma08g45230 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g07444 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g066900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g07444
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g07444
>Glyma18g07444.1   sequence type=CDS   gene model=Glyma18g07444   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACTTTTTCCCGCTAATAACACAAACCTTATGTCATATATTCTCTTCTTCCTTCACTCCGTTACCAGATCCCATTTTCATTTTCTTCTTCAACCTTGAAAATCCTAATCCCATTTCTCTTCACGGTTCTCTCACCTCCAAAACAATGCCAGTCATCGCCGCCAAGCGCACGTTGCGATCTCACCCTTCCTCGCCCCCTCGCAAATCTCCCCGCCGATGCACAGCCGCAACCCCCAATTCCACCCCTACGAAAAACAGATTGGGTGGCGCCGACGAAAACCAAGCTGATCCGGCAGCTGTGAAACCCAAGTGGAATCCCAAAGATGGTGAGCAATTGAAGAGGGCAAAAATGGCACTGCACTTGTCCACTGCACCGTCTTCGGTTGTGTGCCGCGAGGAGGAGCAGAATATGGTTTTGGAGTTCTGCAAGGGGTGCGTTGAGCACCAGAAGGCTGGGAGTCTCTACATATGCGGGTGTCCCGGAACCGGGAAATCATTATCTATGGAGAAAGTGAAAGATAAATTACTCAATTGGGCTAAGGAGGAAGGTCTTCCACTGCCAGATGTTTTGTCTGTAAATTGTACAACCCTTACCAATACATCAGATATTTTCACTAAGATACTTGGGTTAAACCAAACACAGGGTAAAAAGGTTTCAGCCTTGCCCTTGCAGCAGCTTCAGAACATGTATTCTCAGAAATCATCTGTCAAGAACATGACATTGATAGTAGCTGATGAATTAGATTATTTGATAACCAAAGACAGAGCCGTGCTCCATGATCTTTTCATGCTCACCACCTTTCCTTTTTCTAGATGTATATTAATAGGTGTAGCGAATGCAATTGATCTAGCTGATCGATTTCTTCCAAGGCTTACATCATTGAATTGCAAACCTATTGTTGTAAATTTTCGGGCTTACTCTAAAGATCAGATCCTCAAGATTCTTGAAGAAAGGTTAAATGAATTTCCTTACAGTGTTTTCCAACAGCAAGCCCTGGAACTATGTGCTAGGAAAGTAGCTGCAACTTCTGGAGACATGCGGAATGCTCTTTGTATATGCGGGAGTGCAATAGAGATGCTTGAAGCAGAAATTAGAGAATCTGCCTGCAATTTGAATACCTCATTGGAAGAGATATCATCCTCAAGACAAAATTTTGCAACAGCTCCTGATTTTATGAAAAAACGAGAATTTGATACTGTAAAGACTGATCATATGGCTCGTGCCTTGTCCAAGACATATAGATCACCAGTGGTGGATACAATACAATCTCTGCCACATCATCAGCAGATTGTACTCTGCTCTTCTATGAAACATTTTCGTGGAGCCAAGAAAGATGCAATCCTTGGAGAGTTGTATAAATCGTATGTGGGGGTATGCAAATCTTGTTTAATTCCTCCAGCGGGAATCTTAGAATTTTCAAACATGTGCAGAGTGCTAAATGACCAGGGCCTTATTAAACTTGGACAATCTCGAGAGGATAAATTGAGAAGAGTGTCACCTAAAATAGACGAGGGTGATATTACGTTTGCATTGCAGGGAATACGGTTTTTTCAAAACTGCCTTTAA
Predicted protein sequences of Glyma18g07444
>Glyma18g07444.1   sequence type=predicted peptide   gene model=Glyma18g07444   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNFFPLITQTLCHIFSSSFTPLPDPIFIFFFNLENPNPISLHGSLTSKTMPVIAAKRTLRSHPSSPPRKSPRRCTAATPNSTPTKNRLGGADENQADPAAVKPKWNPKDGEQLKRAKMALHLSTAPSSVVCREEEQNMVLEFCKGCVEHQKAGSLYICGCPGTGKSLSMEKVKDKLLNWAKEEGLPLPDVLSVNCTTLTNTSDIFTKILGLNQTQGKKVSALPLQQLQNMYSQKSSVKNMTLIVADELDYLITKDRAVLHDLFMLTTFPFSRCILIGVANAIDLADRFLPRLTSLNCKPIVVNFRAYSKDQILKILEERLNEFPYSVFQQQALELCARKVAATSGDMRNALCICGSAIEMLEAEIRESACNLNTSLEEISSSRQNFATAPDFMKKREFDTVKTDHMARALSKTYRSPVVDTIQSLPHHQQIVLCSSMKHFRGAKKDAILGELYKSYVGVCKSCLIPPAGILEFSNMCRVLNDQGLIKLGQSREDKLRRVSPKIDEGDITFALQGIRFFQNCL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo