Glyma18g07280 - SoyBase

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Report for Sequence Feature Glyma18g07280

Feature Type:	gene_model
Chromosome:	Gm18
Start:	5949124
stop:	5957364
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g07280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G58870	AT	Annotation by Michelle Graham. TAIR10: FTSH protease 9 \| chr5:23770080-23773719 REVERSE LENGTH=806	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0010304	GO-bp	Annotation by Michelle Graham. GO Biological Process: PSII associated light-harvesting complex II catabolic process	SoyBase	N/A	ISS
GO:0030163	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein catabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0004176	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP-dependent peptidase activity	SoyBase	N/A	ISS
GO:0004222	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metalloendopeptidase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008237	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metallopeptidase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
KOG0731	KOG	AAA+-type ATPase containing the peptidase M41 domain	JGI		ISS
PTHR23076	Panther	METALLOPROTEASE M41 FTSH	JGI		ISS
PTHR23076:SF6	Panther	FTSH HOMOLOG	JGI		ISS
PF00004	PFAM	ATPase family associated with various cellular activities (AAA)	JGI		ISS
PF01434	PFAM	Peptidase family M41	JGI		ISS
PF06480	PFAM	FtsH Extracellular	JGI		ISS
UniRef100_G7K6A4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cell division protease ftsH-like protein n=1 Tax=Medicago truncatula RepID=G7K6A4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1J3Y7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J3Y7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g07280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g07280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g065600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g07280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g07280

Limit To All Plant Sequences

>Glyma18g07280.2   sequence type=CDS   gene model=Glyma18g07280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTACCCTTAGAGCATCACTTTCACTATCTCCCTCCCTTAACCCACACCAAATTGAAACCCTTTTCCCGCGCAAATTCTAGGGTTTCCCTTCCCCATATCGAGACCACCCTCCGTCGTTTCAACCCCTCTTCGTGTCGTTTCCGATGTCCAATTTCATCCAACGATTCGCTTAGGTTCGGTTTGAGGGGTGGCCACCGAACATCATGGGTGTGTCGTTCCGCCGGAGAACCCGATTCCGCGGCGGATTCCGGCGAGAAGAAAACCGGCAGCGACGACGACGCCGATTCGAACCGGAGAAAGGGCGGGTGGTGGTGGCGGTGGCGCCGGTGGCGGTGGCAGCCCCTGATTCAGGCTCAGGAAATTGGGGTCCTGCTCATGCAAATTGGGATTGCGTTTTTCGTTTTGCGGTTGCTCCGGCCCGGAGTTTCGCTACCCGGGTCGGATCCTCGGTCTCCGACTGTGTTTGTGAGTGTGCCTTATAGTGATTTTTTGAGTAGGATCAATAGTGACCAGGTGCACAAGGTGGAGGTTGATGGGGTCCACATCATGTTCAAGTTGAAGGCTGGTGTTGGAACAAGCCATGATGATGGTGGTGATGTTGTTGCAGGTAGTAGTAGTAGGTTGCAGGAATCAGAGTCTTTGGTGAAGAGTGTTGCAACAACTAGGAGGATAGTGTATACTACCACAAGGCCTAGTGATATCAGAACACCCTATGAGAAGATGCTGGACAATAAAGTGGAATTTGGGTCCCCAGATAAGCGGTCTGGCGGATTCTTTAACTCTGCTCTGATAGCCTTGTTTTATGCTGCTGTGCTTGCGGGGCTTCTCCATCGATTCCCTGTAAGCTTTTCTCAGCATACGGCTGGTCAGATACGGAACCGCAAATCAGGCCCTTCTGCTGGTACAAAGTCATCTGAACAAGGAGAAACAGTCACTTTTGCTGATATTGCTGGTGTTGATGAAGCTAAAGAGGAGTTAGAAGAGATTGTAGAATTTCTGCAAAATCCAGATAGATACGTAAGGCTTGGTGCTCGCCCACCTCGTGGTGTTCTCTTGGTGGGTCTTCCTGGAACAGGTAAGACTTTACTTGCGAAGGCTGTGGCTGGGGAAGCTGATGTGCCATTTATAAGTTGTTCTGCTAGTGAGTTCGTAGAATTGTATGTTGGCATGGGTGCCTCTCGTGTAAGAGATCTATTTGCAAGGGCTAAAAGGGAAGCTCCGTCCATAATCTTTATTGATGAGATAGATGCTGTGGCTAAAAGTCGTGATGGCAAATTTCGCATTGTCAGCAATGATGAACGAGAGCAAACCTTGAATCAGTTGCTCACTGAGATGGATGGGTTTGATAGCAATTCTTCAGTGATTGTTCTTGGAGCTACTAATCGGTCAGATGTCTTGGATCCTGCACTTCGCCGGCCAGGAAGATTTGATCGTGTAGTTATGGTAGAAGCACCTGATAGAATTGGAAGAGAAGCCATCCTAAAAGTTCATGTTTCCAAGAAGGAACTTCCTTTAGCCAAGGATGTTGACCTCAGTGGCATTGCTTGTATGACCACTGGTTTTACTGGAGCAGATCTTGCAAACCTAGTAAATGAGGCTGCTTTACTGGCTGGGAGACAAAATAAAGTTGTGGTGGAGAAACTTGATTTCATCCAAGCTGTAGAAAGATCTATAGCTGGCATAGAGAAGAAGACTGCCAAGTTGCGAGGAAGTGAGAAGGCTGTAGTTGCACGACATGAGGCTGGTCATGCTGTAGTAGGTACTGCAGTTGCAAAGCTTCTTCCTGGACAGCCACGTGTTGAGAAACTAAGTATATTGCCAAGGTCAGGAGGGGCTTTGGGCTTTACTTATATTCCTCCAACAACTGAGGATAGATACTTGCTATTTGTCGATGAGTTGCATGGTCGCCTGGTGACCCTTCTTGGAGGACGTGCAGCTGAAGAAGTTGTTTTTTCTGGTCGAGTGTCAACAGGTGCACTTGATGACATACGACGAGCAACTGACATGGCATACAAGGCTATAGCTGAATATGGTCTTAATCAGACCATAGGTCCTGTTTCAATAGCCACTCTTTCTAGTGGTGGAATTGATGAGTCTGGGGGAGCAGTTCCTTGGGGAAGGGATCAGGGACATCTTGTTGATCTTGTTCAAAAAGAGGTGCAAACATTACTGCAGTCTGCACTGGCTGTAGCACTTTCCATTATCCGAGCCAATCCTACTGTTTTGGAGGGCCTTGGTGCTGATTTGGAAGAAAAGGAGAAAGTTGAGGGTGAAGAGCTACAGAAGTGGTTAAGATTGGTTGTCGCACCAACAGAGCTTGATGCCTTTGTCAAAGGTACACAGCCACCTCTTCTTCCATCGCAGACAGGTTCCTGA

Predicted protein sequences of Glyma18g07280

Limit To All Plant Sequences

>Glyma18g07280.2   sequence type=predicted peptide   gene model=Glyma18g07280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLPLEHHFHYLPPLTHTKLKPFSRANSRVSLPHIETTLRRFNPSSCRFRCPISSNDSLRFGLRGGHRTSWVCRSAGEPDSAADSGEKKTGSDDDADSNRRKGGWWWRWRRWRWQPLIQAQEIGVLLMQIGIAFFVLRLLRPGVSLPGSDPRSPTVFVSVPYSDFLSRINSDQVHKVEVDGVHIMFKLKAGVGTSHDDGGDVVAGSSSRLQESESLVKSVATTRRIVYTTTRPSDIRTPYEKMLDNKVEFGSPDKRSGGFFNSALIALFYAAVLAGLLHRFPVSFSQHTAGQIRNRKSGPSAGTKSSEQGETVTFADIAGVDEAKEELEEIVEFLQNPDRYVRLGARPPRGVLLVGLPGTGKTLLAKAVAGEADVPFISCSASEFVELYVGMGASRVRDLFARAKREAPSIIFIDEIDAVAKSRDGKFRIVSNDEREQTLNQLLTEMDGFDSNSSVIVLGATNRSDVLDPALRRPGRFDRVVMVEAPDRIGREAILKVHVSKKELPLAKDVDLSGIACMTTGFTGADLANLVNEAALLAGRQNKVVVEKLDFIQAVERSIAGIEKKTAKLRGSEKAVVARHEAGHAVVGTAVAKLLPGQPRVEKLSILPRSGGALGFTYIPPTTEDRYLLFVDELHGRLVTLLGGRAAEEVVFSGRVSTGALDDIRRATDMAYKAIAEYGLNQTIGPVSIATLSSGGIDESGGAVPWGRDQGHLVDLVQKEVQTLLQSALAVALSIIRANPTVLEGLGADLEEKEKVEGEELQKWLRLVVAPTELDAFVKGTQPPLLPSQTGS*

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