SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G58940 | AT | Annotation by Michelle Graham. TAIR10: calmodulin-binding receptor-like cytoplasmic kinase 1 | chr5:23798659-23800716 FORWARD LENGTH=470 | SoyBase | E_val: 2.33E-156 | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009697 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0042542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0004683 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calmodulin-dependent protein kinase activity | SoyBase | N/A | ISS |
| GO:0005516 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calmodulin binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| KOG1187 | KOG | Serine/threonine protein kinase | JGI | ISS | |
| PTHR24420 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24420:SF813 | Panther | JGI | ISS | ||
| PF07714 | PFAM | Protein tyrosine kinase | JGI | ISS | |
| UniRef100_D8V833 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Calcium-dependent/calmodulin-binding receptor-like kinase n=1 Tax=Glycine soja RepID=D8V833_GLYSO | SoyBase | E_val: 0 | ISS |
| UniRef100_D8V833 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Calcium-dependent/calmodulin-binding receptor-like kinase n=1 Tax=Glycine soja RepID=D8V833_GLYSO | SoyBase | E_val: 0 | ISS |
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Glyma18g07140 not represented in the dataset |
Glyma18g07140 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g064100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g07140.1 sequence type=CDS gene model=Glyma18g07140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGAAAACACCAGCCCCCAGTTTGCATCAGTCTAACCAAAGACAAAAGAATGTTGGATTCCAAGATAGAGGTGCAGCCAATGGCACACAGAGTCACAGTGTTCAGAACCATTCTGCTCTGACATATTTCAAGTCTTCCTTCAAGAAATTTTTTACATTGTTTCTCTCTGGGAAGAGAAAAACAGATTCAGAAGCTGCTGAAAGTGATGACCGAAAGAATACACACAAAGTTAGAGGGGTATCATCTTCCACAGATGTATCATCTGATAGTTCCAAGAGTTCATCAAAAAGGGTGTCTTCTCATTCCTCTGCATCATCTGGCCCTACAAGAAGTAGTCAGCTTGGAATGGGAAATTTCACCTTTGAGGAAATCTACAAGGCAACGGCAAAGTTCTCTCTTGATAATAAGATTGGGGAAGGTGCGTTTGGAACAGTGTATAAGGGAAAGCTTAATGATGGATCCCTTGTGGCTGTAAAGCGTGCCAAGAAGGATTTACCAAACAATAACTTAGCTGAGTTCAAGAATGAAATAAACACCTTGTCAAAAATTGAGCACATTAACCTTGTAAAGTGGTATGGATATTTGGAGCATGGACATGAAAAAATTATTGTTGTTGAATATGTTAGTAATGGAACTCTTCGGGAACATTTAGATGGTATTCGGGGAGATGTACTAGAAATTGGTGAGCGTCTAGACATAGCAATTGATATAGCTCATGCAATTACTTACCTTCATATGTACACAGATCATCCAATTATTCATAGAGACATCAAAGCATCAAATATCTTAATCACTGATAAACTAAGGGCCAAAGTGGCAGACTTTGGTTTTGCTCGGTTGGGACCAGAAGACCCAGGTGCAACCCATATTTCAACTCAAATTAAAGGAACTGCTGGCTACATGGATCCTGATTACATGCGAACTCAACATCTCTCTGAAAAGAGCGATGTTTATTCCTTCGGCGTGTTGCTTGTTGAAATGATGACAGGAAGACATCCAATTGAACCACAGAGACCTCTCAGTGAGAGAGTTACAATTAAATGGGCAATGCAGTTGTTGAAACAAGCAGAAGTTGTGATGGCCATGGATCCGAGACTGAGGAGAAATCCAGCCTCAAACAAGGCAGTACAAAAGGTTCTCAAGCTAGCTTTCCAATGCCTTGCACCAGGGAGACAACCACGACCATCTATGAAGAGTTGTGCAGAGGTTCTGTGGGAGATCCGTAAAGATTTTAGAGAAAAAGCATTTTCTCATCCTCCTCACCATTCTGCAGATTTTCCTCAAAGAGATGGTAGGAAGAATAGGCATAAGACATATGGTATTGAAGATGGTAAAGGCTATAAATTTGTATCTGCTTAA
>Glyma18g07140.1 sequence type=predicted peptide gene model=Glyma18g07140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKKTPAPSLHQSNQRQKNVGFQDRGAANGTQSHSVQNHSALTYFKSSFKKFFTLFLSGKRKTDSEAAESDDRKNTHKVRGVSSSTDVSSDSSKSSSKRVSSHSSASSGPTRSSQLGMGNFTFEEIYKATAKFSLDNKIGEGAFGTVYKGKLNDGSLVAVKRAKKDLPNNNLAEFKNEINTLSKIEHINLVKWYGYLEHGHEKIIVVEYVSNGTLREHLDGIRGDVLEIGERLDIAIDIAHAITYLHMYTDHPIIHRDIKASNILITDKLRAKVADFGFARLGPEDPGATHISTQIKGTAGYMDPDYMRTQHLSEKSDVYSFGVLLVEMMTGRHPIEPQRPLSERVTIKWAMQLLKQAEVVMAMDPRLRRNPASNKAVQKVLKLAFQCLAPGRQPRPSMKSCAEVLWEIRKDFREKAFSHPPHHSADFPQRDGRKNRHKTYGIEDGKGYKFVSA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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