SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G47160 | AT | Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr3:17360238-17361879 REVERSE LENGTH=245 | SoyBase | E_val: 3.00E-117 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG1039 | KOG | Predicted E3 ubiquitin ligase | JGI | ISS | |
| PTHR15067 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR15067:SF7 | Panther | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEI | JGI | ISS | |
| UniRef100_C6T3M9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6T3M9_SOYBN | SoyBase | E_val: 6.00E-179 | ISS |
| UniRef100_Q9LLM2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: MTD2 n=1 Tax=Medicago truncatula RepID=Q9LLM2_MEDTR | SoyBase | E_val: 4.00E-157 | ISS |
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Glyma18g07090 not represented in the dataset |
Glyma18g07090 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g063500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g07090.2 sequence type=transcript gene model=Glyma18g07090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTCGAACATGGTAACCCACTTGTATCAATACCATTAGCAAAACCAAGAGTAGTTAGAACCGAAAGGGTAATAGTGTCACTGTGAGTGTCATATACAAATCATATCATATGATATATATTGGTATAATATCAACACCATAGGCTTTGTGGGATTATTCTTAGTTGCACGCAGAAAAATTTTCTGGGAAAATATCTTGGTATGGGAAAGGGATCTTTTCAGGACTCTGTTAAAGCTCTGGAAGCTGACATTCAGTATGCTAATACCCTTGGTAGAGTTGGACTTTGAAGCTGAGAATTTGTTTAAAGAAGATGTTGATGAACTGCACCTGTGAATTTGCATGACACTCAGTTGGAAAATTGAATTAGATAACACTTTTCAATATCCAAAAACTTCATTGATATGTTTATGATGGAGTCTTTCATACTAATTCTTTAAGCAGAGTTTAGCACTTTTCTCATGTGAGTGAGATTGTATGCTTTCTTTTCGCCTCTTTGTTAGGGCATTAGGCTATCCAAGGGACAAAGATGGAGGATGCTTTCAGATGAGGATATCATACAGTCCAGCAGCCCCTCTTTTTCTGTTTCTTGTTCAATGGACCGATTACCGCCTCGCCGGTGCTCTGGGTTTGCTGAGAATTCTAATTTATGTGACTTATGGAAATGGGAAGAATACTATGTCAATATATGAAAGGAAAGCAAGCATTAGACAATTTTACTCGATTATATTTCCTGCTCTGTTGCAACTTGAGAAAGGCATCACAGATTTGGAGGAAAGGAAACAGAAAGAAGTATATGCCCTTAGATACCAAAGGAAAAGTGAGTTCAATGAGAGAAGACAATCTGAAATTGACATTGAAAGAGAAGAGGAATGTGGAGTGTGCTTGGAGGTGAAAGCAAAAGTTGTGCTTCCTAATTGCTGCCACTACATGTGTTTGAAGTGCTACAGAGATTGGTGTCAGAGGTCTCAGTCTTGCCCCTTTTGCCGGGATAGCCTGAAGAGAACCAACTCTGGGGACCTTTGGATTTACACTGACACCAGTGACATTGTTGATGTTGGGACAATTTTCAAAGAGAATTGTAAGATGCTGTTTCTGTACATAGAGAAGCTGCCTCTAATTGTTCCAGATCCCAGATATGTGTTCTATGATCCACTTCTGAGATGAAGGAATTGCCTACAGATTTTTGGAAAATAGTGTGTATGTTTCACTTTACTTGTACATGCATTTTAGACCATAATTTAATTGTGTATATATTTAACTGGCTTTTTTCCAATCGGCTTCAAGTTGGTGATTTATTTCTAACCCAAAGTTCCAATATTCTGCTGTCCCCTATCTATCTACCATACAGTGATTTGCTTATTCACTTATAATAATAATAATAAGGCAAAC
>Glyma18g07090.1 sequence type=CDS gene model=Glyma18g07090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAAAGGGATCTTTTCAGGACTCTGTTAAAGCTCTGGAAGCTGACATTCAGTATGCTAATACCCTGGCATTAGGCTATCCAAGGGACAAAGATGGAGGATGCTTTCAGATGAGGATATCATACAGTCCAGCAGCCCCTCTTTTTCTGTTTCTTGTTCAATGGACCGATTACCGCCTCGCCGGTGCTCTGGGTTTGCTGAGAATTCTAATTTATGTGACTTATGGAAATGGGAAGAATACTATGTCAATATATGAAAGGAAAGCAAGCATTAGACAATTTTACTCGATTATATTTCCTGCTCTGTTGCAACTTGAGAAAGGCATCACAGATTTGGAGGAAAGGAAACAGAAAGAAGTATATGCCCTTAGATACCAAAGGAAAAGTGAGTTCAATGAGAGAAGACAATCTGAAATTGACATTGAAAGAGAAGAGGAATGTGGAGTGTGCTTGGAGGTGAAAGCAAAAGTTGTGCTTCCTAATTGCTGCCACTACATGTGTTTGAAGTGCTACAGAGATTGGTGTCAGAGGTCTCAGTCTTGCCCCTTTTGCCGGGATAGCCTGAAGAGAACCAACTCTGGGGACCTTTGGATTTACACTGACACCAGTGACATTGTTGATGTTGGGACAATTTTCAAAGAGAATTGTAAGATGCTGTTTCTGTACATAGAGAAGCTGCCTCTAATTGTTCCAGATCCCAGATATGTGTTCTATGATCCACTTCTGAGATGA >Glyma18g07090.2 sequence type=CDS gene model=Glyma18g07090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTTCTTTTCGCCTCTTTGTTAGGGCATTAGGCTATCCAAGGGACAAAGATGGAGGATGCTTTCAGATGAGGATATCATACAGTCCAGCAGCCCCTCTTTTTCTGTTTCTTGTTCAATGGACCGATTACCGCCTCGCCGGTGCTCTGGGTTTGCTGAGAATTCTAATTTATGTGACTTATGGAAATGGGAAGAATACTATGTCAATATATGAAAGGAAAGCAAGCATTAGACAATTTTACTCGATTATATTTCCTGCTCTGTTGCAACTTGAGAAAGGCATCACAGATTTGGAGGAAAGGAAACAGAAAGAAGTATATGCCCTTAGATACCAAAGGAAAAGTGAGTTCAATGAGAGAAGACAATCTGAAATTGACATTGAAAGAGAAGAGGAATGTGGAGTGTGCTTGGAGGTGAAAGCAAAAGTTGTGCTTCCTAATTGCTGCCACTACATGTGTTTGAAGTGCTACAGAGATTGGTGTCAGAGGTCTCAGTCTTGCCCCTTTTGCCGGGATAGCCTGAAGAGAACCAACTCTGGGGACCTTTGGATTTACACTGACACCAGTGACATTGTTGATGTTGGGACAATTTTCAAAGAGAATTGTAAGATGCTGTTTCTGTACATAGAGAAGCTGCCTCTAATTGTTCCAGATCCCAGATATGTGTTCTATGATCCACTTCTGAGATGA
>Glyma18g07090.1 sequence type=predicted peptide gene model=Glyma18g07090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGKGSFQDSVKALEADIQYANTLALGYPRDKDGGCFQMRISYSPAAPLFLFLVQWTDYRLAGALGLLRILIYVTYGNGKNTMSIYERKASIRQFYSIIFPALLQLEKGITDLEERKQKEVYALRYQRKSEFNERRQSEIDIEREEECGVCLEVKAKVVLPNCCHYMCLKCYRDWCQRSQSCPFCRDSLKRTNSGDLWIYTDTSDIVDVGTIFKENCKMLFLYIEKLPLIVPDPRYVFYDPLLR* >Glyma18g07090.2 sequence type=predicted peptide gene model=Glyma18g07090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLSFRLFVRALGYPRDKDGGCFQMRISYSPAAPLFLFLVQWTDYRLAGALGLLRILIYVTYGNGKNTMSIYERKASIRQFYSIIFPALLQLEKGITDLEERKQKEVYALRYQRKSEFNERRQSEIDIEREEECGVCLEVKAKVVLPNCCHYMCLKCYRDWCQRSQSCPFCRDSLKRTNSGDLWIYTDTSDIVDVGTIFKENCKMLFLYIEKLPLIVPDPRYVFYDPLLR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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