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Report for Sequence Feature Glyma18g07050

Feature Type:gene_model
Chromosome:Gm18
Start:5744906
stop:5747422
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g07050
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G58740AT Annotation by Michelle Graham. TAIR10: HSP20-like chaperones superfamily protein | chr5:23725936-23727528 REVERSE LENGTH=158 SoyBaseE_val: 1.00E-109ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG2265 KOG Nuclear distribution protein NUDC JGI ISS
PTHR12356Panther NUCLEAR MOVEMENT PROTEIN NUDC JGI ISS
PF04969PFAM CS domain JGI ISS
UniRef100_C6SZU0UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6SZU0_SOYBN SoyBaseE_val: 5.00E-115ISS
UniRef100_Q8VXX3UniRef Annotation by Michelle Graham. Most informative UniRef hit: NudC domain-containing protein n=2 Tax=Arabidopsis thaliana RepID=Q8VXX3_ARATH SoyBaseE_val: 5.00E-107ISS

Expression Patterns of Glyma18g07050
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g07050 not represented in the dataset
Glyma18g07050 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g07050
ParalogEvidenceComments
Glyma11g26970 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g07050 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g063100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g07050
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g07050
>Glyma18g07050.1   sequence type=CDS   gene model=Glyma18g07050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAAAAATTAGCCCCCGAAAAGCGTCACAGCTTCGTTCACAACGGTCAAAAGGTGTTCGAGTGGGATCAAACCCTTGACGAGGTCAATATTTACATAACTCTTCCTCCTAACGTTCATTCCAAGCAATTCTACTGTAAGATTCAGTCCAAGCACCTCGAACTTGGCATCAAAGGCAATCCTCCGTATCTCAACCATGATCTTACTAGCCCGGTGAAGACAGATTCTTCTTTTTGGACCTTAGAGGATGACATAATGCACATAACACTGCAGAAAAGAGATAAGGGTCAGACATGGGCTTCTCCCATATTAGGTCAGGGTCAGTTGGACCCTTACGCTACTGATCTTGAGCAGAAGCGACTCATGCTTCAGAGATTTCAAGAGGAGAACCCAGGTTTTGATTTTTCACAAGCTCAATTTTCTGGAAACTGTCCTGATCCAAGGACCTTCATGGGTGGAATCCGATCAGATTGA
Predicted protein sequences of Glyma18g07050
>Glyma18g07050.1   sequence type=predicted peptide   gene model=Glyma18g07050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEKLAPEKRHSFVHNGQKVFEWDQTLDEVNIYITLPPNVHSKQFYCKIQSKHLELGIKGNPPYLNHDLTSPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPILGQGQLDPYATDLEQKRLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIRSD*






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