Glyma18g07040 - SoyBase

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Report for Sequence Feature Glyma18g07040

Feature Type:	gene_model
Chromosome:	Gm18
Start:	5735358
stop:	5741683
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g07040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G58720	AT	Annotation by Michelle Graham. TAIR10: smr (Small MutS Related) domain-containing protein \| chr5:23719976-23722974 REVERSE LENGTH=519	SoyBase	E_val: 3.00E-127	ISS
GO:0000956	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process	SoyBase	N/A	ISS
GO:0006298	GO-bp	Annotation by Michelle Graham. GO Biological Process: mismatch repair	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003684	GO-mf	Annotation by Michelle Graham. GO Molecular Function: damaged DNA binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
PF01713	PFAM	Smr domain	JGI		ISS
PF08590	PFAM	Domain of unknown function (DUF1771)	JGI		ISS
UniRef100_B9SI24	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SI24_RICCO	SoyBase	E_val: 7.00E-155	ISS
UniRef100_UPI0001BA5C28	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001BA5C28 related cluster n=1 Tax=unknown RepID=UPI0001BA5C28	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g07040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g07040

Paralog	Evidence	Comments
Glyma11g26980	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g07040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g063000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g07040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g07040

Limit To All Plant Sequences

>Glyma18g07040.1   sequence type=CDS   gene model=Glyma18g07040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAACCCCAGGAAGAAGAAGAGGCCGAAGCCGGCGCAGAAGAAGGTACTTGAGGAGAACAACAAAGGTGTTGTTGTTGCTGGGAATGAAAACGAAGAAGAAGAGAAGAGAAAACGCAGCGTTTTGGAGGCACTGGTTGAGGCTTTCTCCTTGTCTTCAATCAGGGAAGCTTCCATGGCCTATGAGATTGCAGGGGGAGATCCCGACAGGGCTTCGGAGATCCTGAGGAAGGGTTCTTCGGACAGATTCGAGGATTCGTTCTCGTGTTTTTCTTATGGTTCTTCTTCTAGCGGCGGAAGCAGCGGTGGGGGCGGTTCTTCTTCTTGTTCGGGGTTGGAATTGGGTTCGAAAGGTGGGAGGCAGCAGAAGAAGAAGGTGGTTGCTTCAACTGGCACTGTTTCAACGGTTTTGGGGAAGGAATATGTGAGGAGGAACAATATAAGGAACAAGGGGTTTAGTTCTAATGGAGTTTTTGAAATGGAGGAGGCAGAGCAATTCCTCTGCTCTATGCTGGGGGATGATTCTGATATTAACTTGGCTGTTGTTAGAGACGTTCTTTGTCAGTGTGGATATGATATTGAAACGGCCTCAGATGTATTGCTTGATTTAGCTGCTTCCACAAATGACAAACCGAATACTGATAGACATCCTAACTACAGAGTGGACAACATTGATGATGAGAGGTTCTTTGCTGACCCCAATGACAGTTTGATAGACAGGAGATCAGAGTGCACATCTCTTTCATCGGAAGGTTATCTTTCTGATAATCCATGGCCTTTTGGAAGGAAATATGTGGAGGTTCTCAATAGTTCTAAAGCTGATTCTGCTATTAGCCCAGGATGTACAAAGTCTGAAATTCCTCAGAAGGTGTTGGAATCTTTGTTTAATATTCCCAAAAGCACTGAACATGACAAAGATACCATGAATTGGAGAAATGTAGTAAAGAAAATCCAGTCTTTGGGACCTGGGTTCAATGTTTCTCCGCATGTTGCAGAATCTCAGCAACATACGTGTGCTAAGGGAGATGAATATCATGTGTTTAGGGAAGATTCAAAGCAGCAATGGGATTCAGTGAAATCTTATTATACGAAAGCTGCAACAGCATATACCAAACGGGAACGAGCTTATGCTGCATATCTTTCTGACCAGGGTAAAGAACAAACTAGATTAGCTCAGAAAGCAGACACTAAGGCCAGCCATGACATATTTATTGCTAGAAACAAAGGTATAGAAAATATGATAACTATTGACTTACATGGGCAGCACGTGAAACAAGCAATGAGAATGCTGAAACTACACCTTCTGTTTGGATCATATGTTCCCTCTGTCCAGACTCTAAGGGTTATTACAGGATGTGGATCACATGGTGTTGGAAAGTCTAAGCTGAAACAATCAGTTATAAACCTTTTAGATAGAGAAGCAATTGAATGGAGGGAAGAGAACCAGGGAACTGTATTGATTAAACTCAGCGGATGGAGAGAGTATAGCTTTCTAGACACCAGCAGTGACAGTGACAGTAATGATTAA

Predicted protein sequences of Glyma18g07040

Limit To All Plant Sequences

>Glyma18g07040.1   sequence type=predicted peptide   gene model=Glyma18g07040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKNPRKKKRPKPAQKKVLEENNKGVVVAGNENEEEEKRKRSVLEALVEAFSLSSIREASMAYEIAGGDPDRASEILRKGSSDRFEDSFSCFSYGSSSSGGSSGGGGSSSCSGLELGSKGGRQQKKKVVASTGTVSTVLGKEYVRRNNIRNKGFSSNGVFEMEEAEQFLCSMLGDDSDINLAVVRDVLCQCGYDIETASDVLLDLAASTNDKPNTDRHPNYRVDNIDDERFFADPNDSLIDRRSECTSLSSEGYLSDNPWPFGRKYVEVLNSSKADSAISPGCTKSEIPQKVLESLFNIPKSTEHDKDTMNWRNVVKKIQSLGPGFNVSPHVAESQQHTCAKGDEYHVFREDSKQQWDSVKSYYTKAATAYTKRERAYAAYLSDQGKEQTRLAQKADTKASHDIFIARNKGIENMITIDLHGQHVKQAMRMLKLHLLFGSYVPSVQTLRVITGCGSHGVGKSKLKQSVINLLDREAIEWREENQGTVLIKLSGWREYSFLDTSSDSDSND*

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