Glyma18g07000 - SoyBase

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Report for Sequence Feature Glyma18g07000

Feature Type:	gene_model
Chromosome:	Gm18
Start:	5697569
stop:	5700459
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g07000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G55950	AT	Annotation by Michelle Graham. TAIR10: CRINKLY4 related 3 \| chr3:20753903-20756347 REVERSE LENGTH=814	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0009738	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0035556	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction	SoyBase	N/A	ISS
GO:0043069	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
GO:0042803	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF875	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_G7KH13	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Receptor kinase-like protein n=1 Tax=Medicago truncatula RepID=G7KH13_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E9F3	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E9F3 related cluster n=1 Tax=unknown RepID=UPI000233E9F3	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g07000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g07000

Paralog	Evidence	Comments
Glyma11g27060	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g07000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g062500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g07000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g07000

Limit To All Plant Sequences

>Glyma18g07000.2   sequence type=CDS   gene model=Glyma18g07000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACACCACCCTTCACTCTCTCTCTCTCCCTCTTTGTCATTCTCACCATAACCGCCGTCCACGGCCTGGGCTCCGCCGCCACCACTGCCGTCACCTACGGCACCGCCACCGTGTGCGGCATCGTCGCCGGGGAGCCCCAGCACCGCATCCAGTGTTCCCGCAGCGGCAGGCGCGTCGTCCCCCTCACCCTCCCCAACGTTTCCTTCGACGCCATCTCCGGCGGCCGGAGCTTCTTCTGCGGCCTCCGCTCCGGCGGCCGCAGCCTCCACTGCTGGGACACCGCCGCCCCAAACGCCTACTTCCGCTCCAAGAGACTCTTCCACAGCGACGTGGTGCAGTTGGCTGACGTGGCAGTTGGCGACTCTCAGGTGTGCGCCAGAGAGGTGCAATCCGGTGTTGTGCGGTGCTGGAGAGGAAGCGGTGGGGTCCAGTTCAGTTCCCCTTCGGAGGGGTTAAGGTTTCGTAGCAATAGCATCACATGTGGTTGTGGTTTTTCATGTGGGGTGATAAAAGAGAGTGGAAGAGTCGTGTGTTGGGGTGATGGTGATGAGGGTGCAAATACAAAAAGTATTAGCGATGAGATTCAAAGAAAGTTTGAGAATTTCACTATGTCAAGTTTGGTTGCTGGGGTGTCTCATGTGTGTGGTTTGACTCTTCATGGGGCTTTGGTTTGTAGAGGGAACAATGCTTCTGGTCAACTAGGAAATAATGATGGTGTTTTGAGTTCTTCTTTGGAGTTTTCAGGTCTTGCTTTGGGAGAAGATTTCACGTGTGGAATTAGGACTAGGAATGGTGTTGTTGTGTGTTGGGGTGGTGGTTTTGAAAGCGATGTGGTGAAAGGTGTTTCTTTTGAGTCACTTGTTGCTGGTTTGGATTATGTGTGTGGGTTGACAACTAGGAATTTGTCAGTGGTGTGTTGGGGTAAAGGCAGGTTTTTTCATGTGCCTAGTGAGCTTCCATTGGGTGTGATTCTTCCAGGTCCATGTGTTGAGGGTGCTTGTAGCGGCTCTTGTGGTACATATCCTGATTCTGGTGCTCTTTGTCATGGCTCTGGGAGTATTTGTTACTCTTGTCAAACTGAGGTTCCACTAGCAGTTCCATTGCTTCCACCATCAACAACACAAGTTGTTCCAAAACAAGAACATTCTTCACGTGGAGGAAGAAGCTTGAGGGAGTTTTTGATTTTTTTTATTGTTGGATCAGTTGGTGTTTTTGTGGGGTTATGCACTATTCTTTATTTCATTTGGATTTGTGCAAGGAGGTTTTTGTTGAGTAGAAAAGAAGTAGGAGGTAATAATTCTGTGAAACCTACAAGCTCAGAGAGTGATGCATATGTGGATATAATCCCCATGCCTAATGTTGGTTCTAATGGGACAACATTCAGAACTTTTTCTAGCAAAAGTCAGGCATCAAGAAGATTTGGGAGGCATAGGAGTGGTTCATCATCGAAGCATGTCGACAGAACCGAGAGTTTCTCATTGTCTGAACTTGCAATGGCCACTGACAACTACTCGCTGTTTAACAAAATAGGTGCTGGTAGCTTTGGCTGTGTTTACAAAGGCATGCTAAGAGATGGTCGTGAAGTAGCAATTAAAAGAGGAGATACCAGTGCCATGAAGAAGAAATTTCAGGAAAAAGAGATTGCTTTTGATTCTGAATTGGCCATGCTGTCACGGCTTCACCACAAGCACTTGGTGAGGCTAATTGGGTTCTGTGAGGAGAATGATGAGAGGCTCTTGGTCTATGAGTACATGAGTAATGGTTCACTTTATGACCATTTGCATGACAAGAACAATGTTGACAGAAGTAGCAACATTTTGAATTCTTGGAAGATGAGGATCAAGATTGCATTGGATGCTGCTAGGGGAATTGAGTACATTCACAACTATGCGGTGCCACCCATTATCCACAGGGACATCAAGTCCTCCAATATACTCTTGGATTCAAACTGGAATGCTAGAGTTTCTGACTTTGGATTATCAAAAATTTGGCCAGAGACTGAGCAAGAATTGATGTCCTCCAAAGCAGTTGGCACTGTTGGATACATAGACCCTGAGTACTATGTGTTGAATGTGCTGACCACAAAGAGTGATGTGTATGGTTTAGGAGTGGTAATGTTGGAGCTTCTCACAGGAAAAAGAGCAGTGTTCAAACCTGAAGATGGGTCAGGCCCTATGGGGGTGGTGGAATACACAGGGCCAAAGATAGCATCAGGAGAGCTTTGGAGTGTGTTGGATTATAGAGTTGGTCAACCTGAAGTGAATGAGGTTGAGTCCCTTGAGATCATGGCTTACACTGCTATGCATTGTGTGAACTTGGAGGGAAAAGAGAGGCCTGAAATGACTGGCATAGTTGCTAACTTGGAGAGGGCATTGGCTTTCATTGAGGGAACCCCTACTAGCCTCTCCATAGCTTCATTCTCTGCCCCTCTTGAATAA

Predicted protein sequences of Glyma18g07000

Limit To All Plant Sequences

>Glyma18g07000.2   sequence type=predicted peptide   gene model=Glyma18g07000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTPPFTLSLSLFVILTITAVHGLGSAATTAVTYGTATVCGIVAGEPQHRIQCSRSGRRVVPLTLPNVSFDAISGGRSFFCGLRSGGRSLHCWDTAAPNAYFRSKRLFHSDVVQLADVAVGDSQVCAREVQSGVVRCWRGSGGVQFSSPSEGLRFRSNSITCGCGFSCGVIKESGRVVCWGDGDEGANTKSISDEIQRKFENFTMSSLVAGVSHVCGLTLHGALVCRGNNASGQLGNNDGVLSSSLEFSGLALGEDFTCGIRTRNGVVVCWGGGFESDVVKGVSFESLVAGLDYVCGLTTRNLSVVCWGKGRFFHVPSELPLGVILPGPCVEGACSGSCGTYPDSGALCHGSGSICYSCQTEVPLAVPLLPPSTTQVVPKQEHSSRGGRSLREFLIFFIVGSVGVFVGLCTILYFIWICARRFLLSRKEVGGNNSVKPTSSESDAYVDIIPMPNVGSNGTTFRTFSSKSQASRRFGRHRSGSSSKHVDRTESFSLSELAMATDNYSLFNKIGAGSFGCVYKGMLRDGREVAIKRGDTSAMKKKFQEKEIAFDSELAMLSRLHHKHLVRLIGFCEENDERLLVYEYMSNGSLYDHLHDKNNVDRSSNILNSWKMRIKIALDAARGIEYIHNYAVPPIIHRDIKSSNILLDSNWNARVSDFGLSKIWPETEQELMSSKAVGTVGYIDPEYYVLNVLTTKSDVYGLGVVMLELLTGKRAVFKPEDGSGPMGVVEYTGPKIASGELWSVLDYRVGQPEVNEVESLEIMAYTAMHCVNLEGKERPEMTGIVANLERALAFIEGTPTSLSIASFSAPLE*

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