Glyma18g06990 - SoyBase

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Report for Sequence Feature Glyma18g06990

Feature Type:	gene_model
Chromosome:	Gm18
Start:	5654152
stop:	5662641
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g06990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G29970	AT	Annotation by Michelle Graham. TAIR10: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein \| chr2:12776601-12779784 FORWARD LENGTH=1002	SoyBase	E_val: 0	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
PTHR11638	Panther	ATP-DEPENDENT CLP PROTEASE	JGI		ISS
PTHR11638:SF64	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF07724	PFAM	AAA domain (Cdc48 subfamily)	JGI		ISS
UniRef100_G7JZH6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP-dependent Clp protease ATP-binding subunit clpL n=1 Tax=Medicago truncatula RepID=G7JZH6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E9F2	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E9F2 related cluster n=1 Tax=unknown RepID=UPI000233E9F2	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g06990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g06990

Paralog	Evidence	Comments
Glyma11g27120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g06990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g062300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g06990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g06990

Limit To All Plant Sequences

>Glyma18g06990.1   sequence type=CDS   gene model=Glyma18g06990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGACGCCGGTTAGCACCGCGAGGCAATGCCTGACGGATGAGGCGGCGCGTGCTCTCGACGACGCCGTCTCCGTCGCCCGCCGCCGCAGTCACGCCCAGACCACCTCCCTCCACGCCGTCTCCGCCCTCCTCTCCCTCCCCTCTGCCTCCCTCCGCGACGCCTGCTCCCGCTGCCGCAGCTGCTCCTACTCCCCCCGCCTCCAGCTCCGCGCCCTGGAACTCTCCGTCGGCGTCTCCCTGGACCGCCTCCCCACCACCAAATCCTCCGGCGGCGGCGGCGGTGGCGAAGAAGGCCCTCCCGTCTCAAACTCCCTCATGGCCGCCATCAAGCGCTCCCAAGCCAACCAGCGGCGGCACCCCGACAGCTTCCACCTGATGCAGATGATGCAGCAGCAACAGCAAACGACGTCGTTGCTCAAAGTCGAACTCAAACACTTCATTCTCTCTATCCTCGACGACCCTATAGTGAGTCGCGTCTTCGCCGAAGCCGGTTTCCGAAGCTACGACATCAAGCTCGCCCTCCTCCAACCCCCTCCCCCACCCTCCAGAATCTTCTCTCGCCTAACCCCACCGGTTTTCCTCTGCAACCTCGAACCGGTTCAAACCGGTTCCTTCCAACCCGGTTCGCGCCTTGACGAGAATTGCCGCAGAATCGTCGAGGTAGTCGCGAGAAAAACAAAAAGGAACCCTCTTTTGATGGGGGTTTATGCCAAAACCTCTCTCAGGAGCTTCGTTGAAGTTGTGAAGAATGGTAAAGGTGGAGTCTTGCCTTGTGAACTAAACGGTTTGAGCGTGGTTTCGGTGGAAAAGGAGATTGGGGAGTTTCTTAGGGAAGGTGGGAGGGGTGAGAAGATTTTTGAGCATGTGAGTCGTTTGGTGGAGCAGTGTGGTGCTGGGGTTGTGGTGTGTTTCGGGGAAATTGAGGTTTTTGTTGGGGGGAATAATGAAGAGGGTGATGTTGGGTTTGTGGTTTCGCAACTGACGAGGTTGTTGGGGATTCATGGAGGGAAGGTGTGGTTGTTGGGGGTGGCGGGAACATCTGAGGCCTATTCTAAGTTCCTGAGGTTGTTTCCTACTGTGGACAAGGATTGGGATCTGCATCTTCTGACCATGACCTCTGCCACCCCTTCCATGGAAGGACTCTACCCTAAGTCCAGCTTGATGGGGTCCTTTGTGCCATTTGGTGGGTTCTTTTCTACACCTTCTGAGTTCAAGAGTCCCCTAAGCTGTACGAATGCTTCATCTTTAAGTCGGTGTGACTCATGCAATGAAAAGTGTGAGCAAGAAGTTGCTGATATTTTGAAGGTAGGCCCTGCTACTTCGGCATCTGGTTACTCCTCCACGAGCTTGCCTTGGTTACAAAAGGTTAATGTGGACTCAGATAGAAGATTGGATGTGGCAAAGACTAATGAAGAAAATACAAGTTTGAATAAGAAGATCTTCGGATTGCAAAGGAAATGGAGTGATATTTGTCAACGTCTTCATCAAAATCGATCATTACCTGAATTTGATATTACCAAAGCAAGGTTCCAAGCTACTTCCCACGAGGGGTTTCAATTTGGTCCAGGAAGTAGCAGCAAAGGTCCACTCCATAGTGAAATCCAATATCCTAATCAAATTTCCTACATGTCTAAAGTGTCACAGAGTGCATTTCCATTTAAACAGATATTACCAGTTTCAGTACCTTTTGACACTGTTAGTATCACTGATGAAGCAGACCACATACCAAAAGTTTCAAAGAGTCATATGCATGGTACTTGGATTTCTCCTTCCCCTAAGGCCAATATGAGCCTTCTTGATCCCACAACATCTTCTTCCCTGACTCCTGTGACCACAGATTTGGGATTGGGAACAATATACACATCAGCTGCTCATGAGCCAGACACACCAAAACTAAGTGATCATAAGAAGCCTCTTCATCACTTGTCAGACTCCCTTTCAACCGATTTTGATGCTATGAATGAGAGTACTTCACACCAAATCGCTAGATCTTCTTCCTGTTCTGGTCCAAATCTAGAAGGGAGATTTGAAACTGTAGATTTCAAGTCATTTTACCATCTTCTCACTGAAAAGGTTGGCTGGCAGGATGAGGCCATATATGCTATCAATCGAACTGTGTCCCGTTGTAGATCCTGCGCTGGAAAGCGTAGTAGTGGCTCACATGTTAGAGCAGACATATGGCTTGCATTTCTCGGACCAGATAGACTTGGAAAAAGAAAAGTTGCATCAGCACTTGCTGAGATTTTATTTGGAAACAAACAAAGCCTAATCACTGTGGATTTGAGCTCCCAAGACAGGTCTTATCCAACAAACTCGATTTTTGAATTCCAAAATACATATTGTCATGATGTGCTTATGAGGAAGACAGTGTTGGACTATGTTGCTGGGGAGTTAAGTAAAAAGCCACATTCAGTTGTCTTTCTTGAAAATGTAGATCAAGCTGATTTCCTGGTGCAGAATAGTTTGTTCCAAGCAATAAAAACAGGTAAATTCCCATACTCACATGGAAGGGAAATCAGCATCAACAATGCAATGTTCATTGTAACCTCTAGTGTGTTTAAAGGTAGTGGCTCTTTTAGTTTGGAGGGGGATCCTAAAATGTTTCCAGAGGAAAGAATCCTAGAAGCTAAAAGATGTCAAATGCAATTATCACTTGGACATGCTTCTGAGGATGCCAAAAGGAGCGGTTGCACAAATGTGAAGGTTGCACAGAGAAAAGGGACCTCCAAAACAACATTTCTGAATAAAAGAAAGCTAATAGAAAGTGGTGATTCCAAAGAGAAAGCATCATGCAAAACATTGAAACAGGTCGGGGAGGCATCGAGGTCCTATCTGGATCTGAACATGCCTCTTGAGGAGGTTGAAGAGGGCAACAATTACAATGATTATGAAAGTGACGCCTGGTTAAATGATTTGTGTGATCAAGTTGATGAAAAAGTTGTTTTTAAGCCATTCAACTTTGATTCTATTGCTGAGAAAGTAATAAAAAGCATTGACACGCAATTTCAAAAGATGTTAGGATCAGAGTTTATACTTGAAATTGAGTATGAGGTCATGACACAGATACTTGCAGCTGCTTGGTTATCAGACAAGAAAAAAGCAGTGGAGGATTGGGTTGAACATGTTCTTGGCAGAAGCTTAGCTGAAGCTCATCAGAAGTACCGCTTTGTACCTGAATTTGTGATGAAACTGGTTAACTGTGAAAGAATTTTTTTGGAAGAACAATCTCCTGGAGTATGCCTTCCAGCTAGAATTAACTTGAACTGA

Predicted protein sequences of Glyma18g06990

Limit To All Plant Sequences

>Glyma18g06990.1   sequence type=predicted peptide   gene model=Glyma18g06990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPTPVSTARQCLTDEAARALDDAVSVARRRSHAQTTSLHAVSALLSLPSASLRDACSRCRSCSYSPRLQLRALELSVGVSLDRLPTTKSSGGGGGGEEGPPVSNSLMAAIKRSQANQRRHPDSFHLMQMMQQQQQTTSLLKVELKHFILSILDDPIVSRVFAEAGFRSYDIKLALLQPPPPPSRIFSRLTPPVFLCNLEPVQTGSFQPGSRLDENCRRIVEVVARKTKRNPLLMGVYAKTSLRSFVEVVKNGKGGVLPCELNGLSVVSVEKEIGEFLREGGRGEKIFEHVSRLVEQCGAGVVVCFGEIEVFVGGNNEEGDVGFVVSQLTRLLGIHGGKVWLLGVAGTSEAYSKFLRLFPTVDKDWDLHLLTMTSATPSMEGLYPKSSLMGSFVPFGGFFSTPSEFKSPLSCTNASSLSRCDSCNEKCEQEVADILKVGPATSASGYSSTSLPWLQKVNVDSDRRLDVAKTNEENTSLNKKIFGLQRKWSDICQRLHQNRSLPEFDITKARFQATSHEGFQFGPGSSSKGPLHSEIQYPNQISYMSKVSQSAFPFKQILPVSVPFDTVSITDEADHIPKVSKSHMHGTWISPSPKANMSLLDPTTSSSLTPVTTDLGLGTIYTSAAHEPDTPKLSDHKKPLHHLSDSLSTDFDAMNESTSHQIARSSSCSGPNLEGRFETVDFKSFYHLLTEKVGWQDEAIYAINRTVSRCRSCAGKRSSGSHVRADIWLAFLGPDRLGKRKVASALAEILFGNKQSLITVDLSSQDRSYPTNSIFEFQNTYCHDVLMRKTVLDYVAGELSKKPHSVVFLENVDQADFLVQNSLFQAIKTGKFPYSHGREISINNAMFIVTSSVFKGSGSFSLEGDPKMFPEERILEAKRCQMQLSLGHASEDAKRSGCTNVKVAQRKGTSKTTFLNKRKLIESGDSKEKASCKTLKQVGEASRSYLDLNMPLEEVEEGNNYNDYESDAWLNDLCDQVDEKVVFKPFNFDSIAEKVIKSIDTQFQKMLGSEFILEIEYEVMTQILAAAWLSDKKKAVEDWVEHVLGRSLAEAHQKYRFVPEFVMKLVNCERIFLEEQSPGVCLPARINLN*

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