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Report for Sequence Feature Glyma18g06790

Feature Type:gene_model
Chromosome:Gm18
Start:5455366
stop:5458131
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G30070AT Annotation by Michelle Graham. TAIR10: potassium transporter 1 | chr2:12835097-12838466 FORWARD LENGTH=712 SoyBaseE_val: 0ISS
GO:0006813GO-bp Annotation by Michelle Graham. GO Biological Process: potassium ion transport SoyBaseN/AISS
GO:0071805GO-bp Annotation by Michelle Graham. GO Biological Process: potassium ion transmembrane transport SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0015079GO-mf Annotation by Michelle Graham. GO Molecular Function: potassium ion transmembrane transporter activity SoyBaseN/AISS
PF02705PFAM K+ potassium transporter JGI ISS
UniRef100_G7K729UniRef Annotation by Michelle Graham. Most informative UniRef hit: Potassium transporter n=1 Tax=Medicago truncatula RepID=G7K729_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1MZX8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MZX8_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g06790 not represented in the dataset

Glyma18g06790 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma11g27830 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g060800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma18g06790.1   sequence type=CDS   gene model=Glyma18g06790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAACCTTTGCATTATACTCACTTCTCTGTCGAAATGGAAGACTAAGCATTTTACCCAATCAACAATCCATAGATGAGAAATTGTCTACTTATGCCACAGAGGATTCTGCAGACACATGGCAGTGTTCTGTTGTGAAGTTATTCTTTGAAAAGCACCCAGGGATTCGGAAAGGACTTCTGATCTTTGTCCTGCTAGGAACCTGTATGGCAATTGGGGATGGTGTGATTAGTCCTTTGTTGAAGTATAAGTATGAGATCATGACTTATGACTTAATAGTTAGTACTGGAGTTGATATATTTTTAGACTTATATGTGTTAAAAGTTAAAATCAGCGAACTCCATGATAATTATGTTATAATGGTCTCATGTGTCATTTTAGTGGGGCTATTTTCCATTCAGCATCATGGCACACATAGAGTTGCTTTTTTGTTTGCTCCAGTTGTTGCAATATGGCTTTTGTGTATCAGCAGTATTGGTATATACAACATATTCCACTGGAACCCGAAAATATACCGTGCACTTTGCCCAATCTACATGGTGAAGTTCATCAAAACAATTGGGATTGAAGCATGGTTGTCATTAGGAGGAGTGATAGCTTTCACATGTCTAGTATATCCCTGCCTCATTCTGGCATATATGGGTGAGGCTGCATTCCTCTCTAGGCATCATGAAGACATTCGAAGAAAAGCTGTGTTTTGGCCAGTGTCCACAGTGGCAACTTTTGAAGCCATTTTAAGAAGTCAAGCAGTAATTTCTGCTACCTTTTCCATCATAAGCCAGTGCCATGCATTAAATTGTTTTCCTTCAGTGAAGATTATTCATACTTCAACCAGAATATATGGGAAGATATACATCCCAGAAGTCAATTGGATATTGATGTGCTTTTGTTTAGCTATCACAATTGGCCTAAGGGACACTAACGTGATAGGTCATGCATATGGGCTGGCAGTCATCACTGTTATGTTTGTGACAACATGCTTGATGACATTAGTAATTGTGATTGTGTGGAAGCAAGGAATAATAAAAGCCATTGCATGTTTGCTGTTGTTCGGATCAATTGAACTTCTTTACATCTCAGCTTGTATCTGCAAGGTCCCTGAAGGAGGGTGGATCTCACTTGTGCTGTGCTTTATCTTTAATTGTATAATGTACACATGGAACTATGGAACAATGAAGAAACACCAATTCGATGTGGAAAACAAGGTTTCAATGAATAGGATGCTATCTATGGGACCTTCCCTCGGTATGGTTCGTGTCCCGGGAGTAGGACTCATGTACTCTAATCTGGCTTCTGGTTTCCCTGCTATGTTTGGTCACTTTGTTACAAACTTGCCAGCATTCCATCAGGTGCTGGTTTTTGTCTGTGTCAAATCTGTTCAAGTCCCTCATGCAGAGCTTGGCATGTTTCATTGCATTGTCAGGTATGGTTACAAGGACATTCAGCAGGAGAAATATAATTTTGAAAACAAATTGATATCTTCTATAATATATTTTGTGGAATCAGAGGGGGAGAGCATAGAAGAACCAACACATGAATGGTCTGCAAACGATGGAAACTCAAATGTGGAAGATCATGCTGTTTCTCTTTCACAAAACACTTCTGATAAGTCATGTTGTGAAAAGTACTCGCTCCCATCTTCATGTGTTTTGCAGGTAATGATGAATGGTGATAACCATCCTGAAAAGTCTTTCTACAAAGATGAGTCTCTGCAGATTATGAAAGCTAAAGAATTTGGTGTTACCTATATACTAGGCCATTCCCTTGCAAAGGCAAAGAACTCATCTTCCATCCTAAAGAAATTTGCTATAGATGTTGTTTTTGGATTTCTAAGCAAGAATTGCAGAGAGTTTGATGCTGTTCTGGATGTTTCCCATACTTCTTTGCTAGAGGTTGGCATAAAATACTATGTCTAA

>Glyma18g06790.1   sequence type=predicted peptide   gene model=Glyma18g06790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
VTFALYSLLCRNGRLSILPNQQSIDEKLSTYATEDSADTWQCSVVKLFFEKHPGIRKGLLIFVLLGTCMAIGDGVISPLLKYKYEIMTYDLIVSTGVDIFLDLYVLKVKISELHDNYVIMVSCVILVGLFSIQHHGTHRVAFLFAPVVAIWLLCISSIGIYNIFHWNPKIYRALCPIYMVKFIKTIGIEAWLSLGGVIAFTCLVYPCLILAYMGEAAFLSRHHEDIRRKAVFWPVSTVATFEAILRSQAVISATFSIISQCHALNCFPSVKIIHTSTRIYGKIYIPEVNWILMCFCLAITIGLRDTNVIGHAYGLAVITVMFVTTCLMTLVIVIVWKQGIIKAIACLLLFGSIELLYISACICKVPEGGWISLVLCFIFNCIMYTWNYGTMKKHQFDVENKVSMNRMLSMGPSLGMVRVPGVGLMYSNLASGFPAMFGHFVTNLPAFHQVLVFVCVKSVQVPHAELGMFHCIVRYGYKDIQQEKYNFENKLISSIIYFVESEGESIEEPTHEWSANDGNSNVEDHAVSLSQNTSDKSCCEKYSLPSSCVLQVMMNGDNHPEKSFYKDESLQIMKAKEFGVTYILGHSLAKAKNSSSILKKFAIDVVFGFLSKNCREFDAVLDVSHTSLLEVGIKYYV*







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