SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G51770 | AT | Annotation by Michelle Graham. TAIR10: tetratricopeptide repeat (TPR)-containing protein | chr3:19200328-19203998 REVERSE LENGTH=959 | SoyBase | E_val: 0 | ISS |
| GO:0006487 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation | SoyBase | N/A | ISS |
| GO:0009693 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process | SoyBase | N/A | ISS |
| GO:0009755 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hormone-mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010182 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of ethylene biosynthetic process | SoyBase | N/A | ISS |
| GO:0016036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation | SoyBase | N/A | ISS |
| GO:0017145 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stem cell division | SoyBase | N/A | ISS |
| GO:0043161 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0048825 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cotyledon development | SoyBase | N/A | ISS |
| GO:2000069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of post-embryonic root development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0030674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding, bridging | SoyBase | N/A | ISS |
| PTHR23083 | Panther | O-LINKED N-ACETYLGLUCOSAMINE TRANSFERASE, OGT | JGI | ISS | |
| PTHR23083:SF141 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00515 | PFAM | Tetratricopeptide repeat | JGI | ISS | |
| UniRef100_B9S5C3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ethylene-overproduction protein, putative n=1 Tax=Ricinus communis RepID=B9S5C3_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233EC76 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EC76 related cluster n=1 Tax=unknown RepID=UPI000233EC76 | SoyBase | E_val: 0 | ISS |
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Glyma18g06680 not represented in the dataset |
Glyma18g06680 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g29000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g059700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g06680.2 sequence type=CDS gene model=Glyma18g06680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGTGGTTTGAAGCTAACTGAACGTTTCAAGAGCACTCAAGTTCATGCTCTCAGTTCTTCTTCATCAGAAACAAATGGTGGCAATAGCAGCAAAGCCTCAGTGGCTGCTGCCACCAAACCTCACAACTACCTTAAGAGAAACAAAACCATGTTACCATCATGGTCAAAAACCAAATCCAGAACTACCAACAACAACTCAACCTCATCACTAGCAAACCTTGCCCTTCTTCGCCTACCTTCGACCGACACCATTGAACCATCCATAGAACCTCACCTTAAGCCCATCAACCTTGTAGAGACCTTATCAGAACTCTATCATCGCATGGAGTGTTGTACACAGTCCAACAAAGCCTTAATGTGTGCGGAACAGTACTCTCTCTTGCGTGGCCTTGGTGATCAGAAAATACTCAGAAGATGTCTCAGGACAGCATGTCAAAATGCTGAGGATGTGCTCTCCAAGGTTGTGTTGTCTGCGTGGTTGAGGTTTGAGAGGAGGGATGATGAGCTAGTTGGTGTGTGTTCAATGGATTGTGCTGGTTATGTTGTTGAGTGTCCAAAGAAGAATTTGGAACATGGGTTTAGTCCTTGTTCAGTTAATGATCACTGCCAGTGTCAGAAAGAGCCAAATCAGGAAACCTGCACTGATAGTGTGTGTTTGCCAGACGAGGAAAGTGATGTTTTGTTCTGTGTTGGAAGTGAAGAAATCAGTTGTGTTAGGTGCAGGATAGCTGCACTTTCAGACCCTTTTAATGCTATGCTCTATGGTGGCTTTGCTGAGTCCAAAACGAACAAGATCGATTTCTCAGGAAACGGGATATGTCCAAAGGGGATGAGGGCAGTGGAGTTTTACAGCAGGACTAAGAGATTGGACCTCTTCTGTCCAATGACTGTTTTGGAGCTGCTGTCCTTTGCCAATAGGTTTTGTTGTGTGGAGATGAGGTCTGCCTGTGATGCACATTTGGCTTCAATTGTTGTGAATGTTGAAGATGCATTGGTGCTTATTGAGTATGGATTGGAAGAGAGAGCCACCCTTCTTGTAGGGGCTTGCTTACAAGTGTTGCTTAGGGAGCTTCCAAATTCTCTATATAATCCAAAGGTGGCAAAAATATTCTGTAGTTTTGAGGCAAAGGAAAGGTTGGCCAATGTGGGGTGTGCTTCTTTCTTATTGTACTACTTCCTGAGTCAGGTGGCAATGGAGGAAAGCATGGTATCTAAAACCACAATGATGTTGCTGGAGAGAATGGGGGAGTGTGCTGCAGAAAGATGGCAGAAGGCACTAGCATTCCACCAATTGGGGTGTGTGCTTCTTGAAAGGAATGAATACAAAGAAGCTCAACATTGTTTTGAGGCAGCAGTTGAGGAGGGTCATGTTTATTCTTTGGCTGGTGTGGCCAGAACTAAGTACAAGCAGGGTCAACCATATTCAGCCTATAAGTTAATTAGTTCTCTCATATTTGAGTATAAACCAGCAGGGTGGATGTATCAGGAGCGTGCACTGTATAACATGGGAAAGGAAAAGAGTTTTGATTTAGATGTTGCAACTGAATTGGATCCCTCTCTTTCATTTCCATATAAGTATAGAGCACTAGCAAAGGTGGAAGAGAAGAAGATAAAGGAAGGAATTATAGAGTTAGATAGGTTTATTGGATTCAAACTCTCCCCTGATTGCCTAGAATTGAGAGCTTGGTTGTATGTTGCACTTGAGGACTATGACAGTGCAATGAGAGATATTCGGGCGCTGCTGACCATAGAACCGAATTACATAACTTCACATGGGAAGATCAAAGGGGAATACTTGCTCCAACTTCTAAACCGTGGAGTTCAGCAGAAGTGTCAGGCTGATTGCTGGATGCAGTTGTACCAACAATGGTCTTGTGTAGATGATATTGGTTCTTTGGCTATTATACATCAAATGCTAGAGAATGAGCCTGGAAAGAGTGTGCTAGAGTTTCGTCAGTCTCTCCTCCTATTGAGATTAAACTGTCAAAAGGCTGCAATGCGCAGTTTACGATTGGCCAGAAACCATTCTAGCTCAATGCAAGAGAGGCTAGTTTATGAAGGATGGATCCTATATGACACTGGATATCGCAAAGAAGCATTGGCAAGGGCTGACATATCCATTGCAAAGCATAGATCATTTGAAGCTTTTTTTCTAAAAGCATATGTGTTGGCAGATACAACTCTGGATCCTGAATCTTCTTCCTACGTTATTCAGCTTCTAAAAGAAGCACTTAAATGTCCTTCAGATGGTCTTCGCAAAGGACAAGCATTGAATAACTTAGGGAGTATTTATGTGGATTGTGGTAAGCTTGAGCTTGCAAAAGAATGCTACAAGAATGCTCTTGCAATTAGGCACACAAGAGCTCATCAAGGTGTGGCACGCATTTATCATCAGAAAAATCAAAGAAAAGCTGCATATGATGAGATGACCAAGCTAATTGAGAAGGCAGAGAGCAATGCCTCAGCATATGAGAAAAGATCAGAATACTGTGACCGTGAGATGGCAAAGGCTGATCTTGATGTTGTAACTCAACTTGATCCTTTAAGGACCTACCCATATAGATACAGGGCAGCAGTGATGATGGATGAGCAAAAAGAAACTGAAGCAGTAGAAGAACTCACTAAGGCCATAAAGTTCAAGCCTGACCTGCAAATGCTTCATCTACGAGCAGCATTTTATGAATCAATGGGGGACCTATCATCTGCTCTTCAAGATTGTCAGGCGGCTCTTTGCTTAGACCCAAACCATGCAGGCACACTTGATGTATATCGAAGGATACAAAGATTGAACTTTTAA
>Glyma18g06680.2 sequence type=predicted peptide gene model=Glyma18g06680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRGLKLTERFKSTQVHALSSSSSETNGGNSSKASVAAATKPHNYLKRNKTMLPSWSKTKSRTTNNNSTSSLANLALLRLPSTDTIEPSIEPHLKPINLVETLSELYHRMECCTQSNKALMCAEQYSLLRGLGDQKILRRCLRTACQNAEDVLSKVVLSAWLRFERRDDELVGVCSMDCAGYVVECPKKNLEHGFSPCSVNDHCQCQKEPNQETCTDSVCLPDEESDVLFCVGSEEISCVRCRIAALSDPFNAMLYGGFAESKTNKIDFSGNGICPKGMRAVEFYSRTKRLDLFCPMTVLELLSFANRFCCVEMRSACDAHLASIVVNVEDALVLIEYGLEERATLLVGACLQVLLRELPNSLYNPKVAKIFCSFEAKERLANVGCASFLLYYFLSQVAMEESMVSKTTMMLLERMGECAAERWQKALAFHQLGCVLLERNEYKEAQHCFEAAVEEGHVYSLAGVARTKYKQGQPYSAYKLISSLIFEYKPAGWMYQERALYNMGKEKSFDLDVATELDPSLSFPYKYRALAKVEEKKIKEGIIELDRFIGFKLSPDCLELRAWLYVALEDYDSAMRDIRALLTIEPNYITSHGKIKGEYLLQLLNRGVQQKCQADCWMQLYQQWSCVDDIGSLAIIHQMLENEPGKSVLEFRQSLLLLRLNCQKAAMRSLRLARNHSSSMQERLVYEGWILYDTGYRKEALARADISIAKHRSFEAFFLKAYVLADTTLDPESSSYVIQLLKEALKCPSDGLRKGQALNNLGSIYVDCGKLELAKECYKNALAIRHTRAHQGVARIYHQKNQRKAAYDEMTKLIEKAESNASAYEKRSEYCDREMAKADLDVVTQLDPLRTYPYRYRAAVMMDEQKETEAVEELTKAIKFKPDLQMLHLRAAFYESMGDLSSALQDCQAALCLDPNHAGTLDVYRRIQRLNF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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